Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 9.7e-278 959.5 490 100.0
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.0e-218 763.5 492 79.3
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 5.6e-217 757.7 499 77.8
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 2.2e-184 649.4 359 92.5
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 5.5e-180 634.8 488 67.6
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.6e-179 633.3 487 66.1
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 2.1e-179 632.9 487 67.1
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 6.1e-179 631.3 498 65.3
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 8.8e-178 627.5 486 65.4
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.5e-177 626.7 515 62.7
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.3e-176 623.6 486 65.2
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 4.8e-176 621.7 486 65.4
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.8e-175 619.8 487 65.7
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 2.4e-175 619.4 494 66.2
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 2.4e-175 619.4 433 71.6
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 4.1e-175 618.6 487 65.5
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 2.6e-174 615.9 489 64.2
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 4.5e-174 615.1 466 66.7
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 3.8e-173 612.1 486 64.6
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 7.2e-172 607.8 496 62.5
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 7.9e-171 604.4 490 63.3
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 2.3e-170 602.8 496 63.1
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 6.7e-170 601.3 486 63.2
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.0e-169 599.7 489 63.0
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 3.3e-169 599.0 465 64.9
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 9.7e-169 597.4 488 61.3
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 2.2e-168 596.3 487 63.2
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 2.4e-167 592.8 503 61.2
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 7.0e-167 591.3 491 61.5
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.2e-166 590.5 492 60.8
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.5e-166 590.1 489 59.9
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 2.6e-166 589.3 488 60.7
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 7.7e-166 587.8 484 61.8
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.3e-165 587.0 496 60.9
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.7e-165 586.6 497 61.8
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 6.5e-165 584.7 485 60.6
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 7.2e-164 581.3 497 60.0
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 9.4e-164 580.9 484 61.2
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 3.6e-163 578.9 495 60.4
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.0e-162 575.9 450 65.8
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 1.3e-160 570.5 492 60.6
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 1.3e-160 570.5 503 60.4
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 1.3e-160 570.5 498 58.8
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 1.7e-160 570.1 499 59.3
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.4e-159 567.0 484 60.3
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 2.4e-159 566.2 489 60.3
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 9.1e-159 564.3 486 60.1
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 4.5e-158 562.0 487 61.4
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.0e-157 560.8 486 59.9
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.3e-157 560.5 459 62.1
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 6.5e-157 558.1 490 58.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 7.2e-156 554.7 492 58.1
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.7e-155 552.7 565 53.3
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 8.0e-155 551.2 458 59.6
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 1.8e-154 550.1 492 57.7
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 5.2e-154 548.5 487 60.2
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 6.8e-154 548.1 466 60.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 1.5e-153 547.0 502 58.4
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 2.0e-153 546.6 487 60.6
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 2.6e-153 546.2 489 56.6
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 5.7e-153 545.0 486 58.6
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 7.5e-153 544.7 393 71.0
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.1e-151 540.8 479 60.1
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 5.9e-150 535.0 492 56.1
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 5.0e-149 531.9 407 64.9
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.1e-148 530.8 513 54.2
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 5.5e-148 528.5 478 57.5
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 7.5e-145 518.1 487 55.6
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 2.2e-144 516.5 491 56.0
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.4e-143 513.8 495 55.8
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.4e-143 513.8 491 54.8
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 2.4e-143 513.1 496 53.8
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 4.1e-143 512.3 488 55.9
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 7.0e-143 511.5 435 60.9
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.6e-142 510.4 496 54.6
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 3.8e-141 505.8 421 61.3
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 6.6e-141 505.0 487 54.4
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 4.2e-140 502.3 491 53.6
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 2.1e-139 500.0 489 54.8
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.1e-139 500.0 492 54.7
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 2.3e-138 496.5 491 54.4
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 2.3e-138 496.5 493 54.4
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 5.7e-137 491.9 487 53.2
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 4.9e-136 488.8 497 51.9
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 9.2e-135 484.6 525 50.5
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 3.5e-134 482.6 491 51.9
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 5.0e-133 478.8 491 53.6
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 6.6e-133 478.4 491 53.6
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.6e-131 473.8 492 53.5
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 3.6e-131 472.6 492 52.8
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 3.6e-131 472.6 492 52.8
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.8e-130 470.3 546 48.9
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 1.7e-128 463.8 387 60.7
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 3.7e-128 462.6 489 51.9
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 1.7e-125 453.8 356 64.6
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 5.2e-122 442.2 351 67.0
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 6.4e-120 435.3 495 45.7
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.9e-119 433.7 495 45.5
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 7.1e-119 431.8 359 61.3
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.5e-113 414.1 397 52.9
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 4.0e-106 389.4 483 44.7
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 8.9e-106 388.3 486 45.5
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 1.7e-104 384.0 396 52.0
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 7.3e-100 368.6 492 45.5
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 1.3e-93 347.8 250 71.2
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 5.3e-74 282.7 496 36.7
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 2.6e-73 280.4 504 37.5
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.8e-69 267.7 263 52.1
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.0e-69 266.9 235 59.6
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.3e-68 263.5 185 73.5
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 6.9e-66 255.8 170 71.8
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 6.1e-62 242.7 275 49.1
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 5.1e-61 239.6 285 44.6
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 5.7e-60 236.1 359 42.1
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 3.6e-54 216.9 406 36.9
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.4e-45 188.3 135 70.4
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 5.2e-45 186.4 283 42.8
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 3.7e-43 180.3 135 67.4
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 8.2e-43 179.1 108 78.7
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 5.9e-41 172.9 240 41.2
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 4.2e-39 166.8 173 52.0
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 4.0e-37 160.2 403 30.3
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 4.8e-35 153.3 274 35.0
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 6.5e-32 142.9 131 59.5
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.2e-31 140.6 257 35.0
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 3.6e-30 137.1 140 54.3
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 3.7e-27 127.1 131 51.1
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.1e-26 125.6 164 51.2
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 5.9e-25 119.8 109 60.6
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.4e-13 82.0 144 34.0
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 4.4e-12 77.0 436 21.8
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 1.3e-11 75.5 109 45.9
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 3.9e-08 63.9 87 48.3
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 3.9e-08 63.9 87 48.3


User provided reference genes

Program Settings