Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.4e-59 231.5 119 100.0
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.5e-35 152.9 92 87.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 5.3e-28 127.9 109 63.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.6e-24 116.3 93 71.0
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 2.1e-24 115.9 92 70.7
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 2.7e-24 115.5 86 70.9
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 2.7e-24 115.5 91 63.7
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 1.0e-23 113.6 86 72.1
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.3e-23 113.2 86 69.8
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.3e-23 113.2 93 66.7
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.3e-23 113.2 86 70.9
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.3e-23 113.2 86 69.8
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.8e-23 112.8 93 68.8
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 2.3e-23 112.5 91 69.2
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 3.9e-23 111.7 86 69.8
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 3.9e-23 111.7 91 65.9
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 5.1e-23 111.3 86 67.4
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 5.1e-23 111.3 91 68.1
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 6.7e-23 110.9 86 69.8
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 6.7e-23 110.9 86 69.8
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 6.7e-23 110.9 86 69.8
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.7e-23 110.9 86 67.4
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.7e-23 110.9 86 67.4
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.7e-23 110.9 86 67.4
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 8.7e-23 110.5 86 68.6
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 1.1e-22 110.2 86 68.6
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.1e-22 110.2 92 66.3
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.5e-22 109.8 86 66.3
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.5e-22 109.8 86 68.6
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.5e-22 109.8 86 66.3
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.9e-22 109.4 92 64.1
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.9e-22 109.4 86 69.8
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.9e-22 109.4 86 69.8
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.9e-22 109.4 86 69.8
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.9e-22 109.4 86 68.6
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.9e-22 109.4 86 68.6
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.9e-22 109.4 86 68.6
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.5e-22 109.0 86 68.6
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.5e-22 109.0 86 69.8
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 3.3e-22 108.6 86 69.8
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 3.3e-22 108.6 93 65.6
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 4.3e-22 108.2 86 68.6
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.3e-22 108.2 86 69.8
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 7.4e-22 107.5 92 69.6
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 7.4e-22 107.5 92 69.6
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.4e-22 107.5 86 67.4
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.4e-22 107.5 86 67.4
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 7.4e-22 107.5 93 66.7
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 9.7e-22 107.1 82 63.4
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 9.7e-22 107.1 90 66.7
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 9.7e-22 107.1 93 65.6
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 9.7e-22 107.1 91 64.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 9.7e-22 107.1 86 66.3
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 9.7e-22 107.1 86 67.4
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.3e-21 106.7 86 67.4
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.3e-21 106.7 86 67.4
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.6e-21 106.3 83 68.7
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.6e-21 106.3 93 65.6
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.6e-21 106.3 86 66.3
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.2e-21 105.9 86 67.4
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 3.7e-21 105.1 86 68.6
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 3.7e-21 105.1 90 65.6
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.7e-21 105.1 109 57.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.7e-21 105.1 86 66.3
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.7e-21 105.1 86 66.3
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.7e-21 105.1 86 68.6
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 3.7e-21 105.1 86 67.4
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.7e-21 105.1 86 66.3
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 4.8e-21 104.8 92 62.0
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 4.8e-21 104.8 83 61.4
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 4.8e-21 104.8 83 61.4
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 4.8e-21 104.8 83 61.4
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 4.8e-21 104.8 83 61.4
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 4.8e-21 104.8 83 61.4
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 4.8e-21 104.8 83 65.1
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 4.8e-21 104.8 91 65.9
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 6.3e-21 104.4 83 62.7
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 6.3e-21 104.4 93 63.4
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 6.3e-21 104.4 86 65.1
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 6.3e-21 104.4 93 66.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 6.3e-21 104.4 86 62.8
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 8.2e-21 104.0 76 72.4
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 8.2e-21 104.0 86 65.1
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.1e-20 103.6 86 64.0
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.1e-20 103.6 92 64.1
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.1e-20 103.6 93 64.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.4e-20 103.2 93 63.4
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.4e-20 103.2 91 64.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.4e-20 103.2 81 70.4
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.8e-20 102.8 86 64.0
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.8e-20 102.8 92 64.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.8e-20 102.8 86 67.4
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.8e-20 102.8 86 66.3
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.4e-20 102.4 93 65.6
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.4e-20 102.4 92 63.0
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 3.1e-20 102.1 83 63.9
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 3.1e-20 102.1 86 67.4
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.1e-20 102.1 86 61.6
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 4.1e-20 101.7 83 62.7
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 6.9e-20 100.9 92 60.9
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.2e-19 100.1 86 60.5
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.5e-19 99.8 93 58.1
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-19 99.8 83 57.8
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.5e-19 99.8 86 62.8
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.5e-19 99.8 86 62.8
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 2.6e-19 99.0 83 61.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 4.5e-19 98.2 83 61.4
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.5e-19 98.2 83 59.0
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 4.5e-19 98.2 94 61.7
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.9e-19 97.8 91 61.5
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 5.9e-19 97.8 82 61.0
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 5.9e-19 97.8 84 65.5
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 7.7e-19 97.4 83 61.4
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 7.7e-19 97.4 83 59.0
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 7.7e-19 97.4 83 61.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 7.7e-19 97.4 83 59.0
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 7.7e-19 97.4 99 58.6
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 7.7e-19 97.4 95 61.1
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 1.0e-18 97.1 83 59.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.0e-18 97.1 83 57.8
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.3e-18 96.7 82 59.8
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.3e-18 96.7 93 58.1
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 2.2e-18 95.9 83 57.8
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 2.2e-18 95.9 83 57.8
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.2e-18 95.9 83 59.0
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.2e-18 95.9 83 59.0
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.9e-18 95.5 83 59.0
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 2.9e-18 95.5 83 60.2
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 2.9e-18 95.5 86 60.5
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.9e-18 95.5 77 62.3
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 3.8e-18 95.1 88 59.1
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 5.0e-18 94.7 83 57.8
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 8.5e-18 94.0 76 59.2
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.1e-17 93.6 80 66.2
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 2.5e-17 92.4 84 58.3
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.5e-17 92.4 84 58.3
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 2.5e-17 92.4 84 59.5
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.2e-17 92.0 77 62.3
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 6.7e-15 84.3 67 59.7
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 8.2e-13 77.4 74 60.8
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.1e-12 77.0 64 68.8
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 6.9e-12 74.3 82 54.9
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.2e-11 73.6 78 59.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.7e-10 69.7 83 49.4
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.9e-10 68.9 90 51.1
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-10 68.9 59 59.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.2e-09 65.1 60 66.7
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.5e-09 64.7 52 69.2
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 3.6e-08 62.0 47 70.2
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 6.1e-08 61.2 47 72.3


User provided reference genes

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