Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 3.6e-94 348.2 170 100.0
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 1.9e-42 176.4 114 82.5
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 6.2e-38 161.4 113 77.9
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 6.2e-38 161.4 103 76.7
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 8.1e-38 161.0 108 74.1
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 2.2e-35 152.9 107 72.9
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 3.7e-35 152.1 109 71.6
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 4.9e-35 151.8 106 70.8
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.1e-34 150.6 110 68.2
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 2.4e-34 149.4 105 74.3
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 3.2e-34 149.1 108 71.3
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 3.2e-34 149.1 100 74.0
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 4.1e-34 148.7 108 69.4
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 4.1e-34 148.7 88 83.0
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.7e-33 146.0 110 65.5
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 4.6e-33 145.2 112 69.6
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.3e-32 143.7 110 68.2
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 6.6e-32 141.4 104 69.2
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.5e-31 140.2 104 70.2
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 5.6e-31 138.3 110 65.5
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 9.5e-31 137.5 101 69.3
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.2e-30 137.1 98 73.5
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.1e-29 134.0 83 79.5
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 5.2e-29 131.7 107 65.4
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 2.0e-28 129.8 100 67.0
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 2.6e-28 129.4 106 66.0
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 3.4e-28 129.0 106 63.2
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 4.4e-28 128.6 115 65.2
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 5.8e-28 128.3 100 65.0
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 5.8e-28 128.3 107 65.4
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 9.9e-28 127.5 89 67.4
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 2.2e-27 126.3 113 61.1
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 2.9e-27 125.9 115 63.5
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 6.4e-27 124.8 108 64.8
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-26 124.0 103 66.0
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-26 124.0 103 66.0
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.1e-26 124.0 103 66.0
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 1.4e-26 123.6 104 63.5
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 1.4e-26 123.6 89 66.3
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 1.4e-26 123.6 105 63.8
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 4.1e-26 122.1 91 65.9
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 1.2e-25 120.6 113 58.4
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.7e-25 119.4 103 62.1
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.5e-25 119.0 106 60.4
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 3.5e-25 119.0 104 58.7
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 3.5e-25 119.0 108 61.1
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 4.6e-25 118.6 113 61.1
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 6.0e-25 118.2 104 65.4
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 6.0e-25 118.2 105 61.9
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 6.0e-25 118.2 91 69.2
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 6.0e-25 118.2 107 61.7
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 6.0e-25 118.2 113 60.2
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 6.0e-25 118.2 110 58.2
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 1.3e-24 117.1 95 63.2
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 3.9e-24 115.5 108 62.0
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 3.9e-24 115.5 120 56.7
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 6.6e-24 114.8 106 59.4
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 6.6e-24 114.8 101 61.4
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 6.6e-24 114.8 108 55.6
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 8.6e-24 114.4 90 63.3
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 8.6e-24 114.4 96 63.5
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.1e-23 114.0 90 63.3
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.5e-23 112.8 90 62.2
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 4.3e-23 112.1 99 62.6
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 1.2e-22 110.5 109 58.7
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.2e-22 110.5 109 58.7
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 1.2e-22 110.5 107 59.8
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 2.1e-22 109.8 108 59.3
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 3.6e-22 109.0 103 57.3
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 8.1e-22 107.8 108 58.3
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.1e-21 107.5 108 58.3
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 2.4e-21 106.3 133 54.9
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 8.9e-21 104.4 115 49.6
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 8.9e-21 104.4 73 71.2
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 2.6e-20 102.8 111 55.0
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 4.4e-20 102.1 107 53.3
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 2.2e-19 99.8 107 55.1
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 1.9e-18 96.7 106 56.6
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 3.2e-18 95.9 83 65.1
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 8.7e-16 87.8 110 54.5
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 8.7e-16 87.8 106 54.7
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 2.5e-15 86.3 96 53.1
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 3.3e-15 85.9 81 60.5
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 7.3e-15 84.7 87 55.2
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 6.2e-14 81.6 110 48.2
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 6.2e-14 81.6 77 55.8
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 8.1e-14 81.3 88 54.5
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 6.4e-11 71.6 106 42.5
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 2.4e-10 69.7 61 57.4
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.2e-09 67.4 86 44.2
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 1.6e-09 67.0 90 43.3
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.1e-09 66.6 82 43.9
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 3.5e-09 65.9 64 54.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 4.6e-09 65.5 57 57.9
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 6.0e-09 65.1 39 71.8
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 6.0e-09 65.1 79 48.1
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 6.0e-09 65.1 94 43.6
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.3e-08 63.9 73 47.9
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 1.3e-08 63.9 39 69.2
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 3.0e-08 62.8 70 51.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.9e-08 62.4 54 57.4
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 3.9e-08 62.4 47 59.6
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 5.1e-08 62.0 92 43.5
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 5.1e-08 62.0 54 57.4
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.7e-08 61.6 48 62.5
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.7e-08 61.6 56 57.1
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.7e-08 61.6 48 62.5
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 8.7e-08 61.2 48 60.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 8.7e-08 61.2 48 60.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 8.7e-08 61.2 48 60.4
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 8.7e-08 61.2 48 64.6
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 1.1e-07 60.8 90 42.2
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 1.5e-07 60.5 55 54.5
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.9e-07 60.1 54 55.6
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.9e-07 60.1 48 60.4
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.5e-07 59.7 49 55.1
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 2.5e-07 59.7 50 58.0
FvH4_1g18141 Fragaria vesca HOM05D020383 ORTHO05D022607 3.3e-07 59.3 57 49.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.3e-07 59.3 49 59.2
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 3.3e-07 59.3 52 59.6
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.3e-07 59.3 54 50.0
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.3e-07 59.3 49 59.2
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 4.3e-07 58.9 66 48.5
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 4.3e-07 58.9 48 60.4
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.6e-07 58.5 47 57.4
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 5.6e-07 58.5 69 46.4
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 5.6e-07 58.5 44 61.4
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.6e-07 58.5 51 54.9
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.6e-07 58.5 54 55.6
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 5.6e-07 58.5 53 58.5
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 7.4e-07 58.2 48 60.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.4e-07 58.2 48 58.3
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.4e-07 58.2 48 58.3
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.4e-07 58.2 48 58.3
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 9.6e-07 57.8 53 52.8
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 9.6e-07 57.8 86 39.5
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 9.6e-07 57.8 48 58.3
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 9.6e-07 57.8 54 53.7
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 9.6e-07 57.8 53 47.2
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.3e-06 57.4 52 48.1
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.3e-06 57.4 51 54.9
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 1.3e-06 57.4 48 56.2
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.3e-06 57.4 53 47.2
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.3e-06 57.4 53 47.2
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.3e-06 57.4 53 47.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.6e-06 57.0 48 56.2
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.6e-06 57.0 46 58.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.6e-06 57.0 48 58.3
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.6e-06 57.0 48 58.3
Zm00001eb044240 Zea mays HOM05D028875 ORTHO05D003347 1.6e-06 57.0 42 61.9
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.1e-06 56.6 54 51.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.1e-06 56.6 52 55.8
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.1e-06 56.6 48 58.3
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.1e-06 56.6 49 57.1
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.1e-06 56.6 51 52.9
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 2.8e-06 56.2 62 43.5
FvH4_1g18110 Fragaria vesca HOM05D020383 ORTHO05D022607 2.8e-06 56.2 64 45.3
FAN19G0205 Fragaria x ananassa HOM05D020383 ORTHO05D022607 2.8e-06 56.2 64 45.3
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.8e-06 56.2 48 56.2
Nitab4.5_0001072g0010 Nicotiana tabacum HOM05D016189 ORTHO05D009199 2.8e-06 56.2 65 41.5
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 2.8e-06 56.2 69 46.4
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 2.8e-06 56.2 52 51.9
RcHm_v2.0_Chr2g0108601 Rosa chinensis HOM05D020383 ORTHO05D022607 2.8e-06 56.2 49 53.1
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.7e-06 55.8 48 56.2
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.7e-06 55.8 59 50.8
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 3.7e-06 55.8 47 59.6
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.7e-06 55.8 48 58.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 3.7e-06 55.8 51 54.9
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.8e-06 55.5 99 37.4
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 4.8e-06 55.5 53 50.9
Lj1g0020347 Lotus japonicus HOM05D003086 ORTHO05D003347 6.2e-06 55.1 55 50.9
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 6.2e-06 55.1 77 40.3
Peaxi162Scf00548g00006 Petunia axillaris HOM05D016189 ORTHO05D009199 6.2e-06 55.1 58 44.8
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 6.2e-06 55.1 72 40.3
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.2e-06 55.1 51 51.0
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 8.1e-06 54.7 51 49.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.1e-06 54.7 63 49.2
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 8.1e-06 54.7 43 58.1
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 8.1e-06 54.7 51 52.9
Zm00001eb051570 Zea mays HOM05D028875 ORTHO05D003347 8.1e-06 54.7 40 62.5
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 8.1e-06 54.7 42 59.5
Zm00001eb329750 Zea mays HOM05D028875 ORTHO05D003347 8.1e-06 54.7 40 62.5


User provided reference genes

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