Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.3e-162 574.3 293 100.0
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.0e-108 396.4 419 58.9
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.8e-94 349.4 349 58.5
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 5.4e-90 335.1 352 55.1
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 2.0e-89 333.2 352 55.1
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 9.5e-87 324.3 350 55.4
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.4e-85 320.5 351 55.3
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 2.3e-85 319.7 354 52.3
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 9.8e-84 314.3 352 52.8
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 3.7e-83 312.4 352 53.4
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 5.4e-82 308.5 353 50.7
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.7e-81 306.2 354 52.0
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.7e-81 306.2 354 52.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.6e-81 305.4 322 57.1
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 4.6e-81 305.4 353 51.8
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 6.0e-81 305.1 352 51.1
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.7e-80 303.5 354 51.7
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 8.6e-80 301.2 354 51.7
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.9e-79 300.1 354 51.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.5e-79 299.7 353 50.7
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.5e-79 299.7 353 50.7
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.2e-78 297.4 360 50.0
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 1.6e-78 297.0 350 50.0
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 2.1e-78 296.6 350 50.0
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 4.7e-78 295.4 352 50.3
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.2e-78 295.0 356 50.3
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 8.0e-78 294.7 352 50.6
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.2e-76 290.8 351 49.9
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 3.4e-76 289.3 354 49.7
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 4.4e-76 288.9 354 49.7
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 5.8e-76 288.5 350 50.6
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 7.5e-76 288.1 354 50.0
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.2e-75 286.6 353 50.4
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 2.2e-75 286.6 354 48.6
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 6.4e-75 285.0 353 49.6
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 8.3e-75 284.6 351 47.9
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 8.3e-75 284.6 352 50.3
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.4e-74 283.9 351 47.9
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.4e-74 283.9 352 49.4
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.9e-74 283.5 351 49.3
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 4.1e-74 282.3 345 50.1
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 9.2e-74 281.2 329 50.8
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 2.7e-73 279.6 351 49.0
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 6.0e-73 278.5 351 47.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 7.8e-73 278.1 351 47.6
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.0e-72 277.7 352 48.6
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.7e-72 276.9 352 47.4
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 2.3e-72 276.6 380 45.8
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.0e-72 276.2 351 47.3
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 3.0e-72 276.2 357 47.3
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 3.9e-72 275.8 351 49.6
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 3.9e-72 275.8 354 47.7
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 5.1e-72 275.4 352 48.9
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 5.1e-72 275.4 351 49.0
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 8.6e-72 274.6 355 46.8
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.1e-71 274.2 355 45.9
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.5e-71 273.9 351 48.1
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.5e-71 273.9 352 49.4
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.5e-71 273.1 350 47.4
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 3.3e-71 272.7 353 47.0
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 3.3e-71 272.7 351 47.0
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 4.3e-71 272.3 356 46.3
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 4.3e-71 272.3 344 47.4
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 5.6e-71 271.9 352 48.6
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 7.3e-71 271.6 355 47.0
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 2.1e-70 270.0 353 46.5
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 2.1e-70 270.0 354 47.5
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.8e-70 269.6 350 47.1
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 4.7e-70 268.9 353 47.0
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 6.2e-70 268.5 358 45.8
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 8.1e-70 268.1 341 46.3
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.4e-69 267.3 353 46.7
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 2.3e-69 266.5 350 45.4
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.1e-69 266.2 354 46.0
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 3.1e-69 266.2 249 58.2
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 8.9e-69 264.6 357 44.5
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 8.9e-69 264.6 356 44.7
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 1.3e-67 260.8 350 44.9
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 1.9e-66 256.9 359 42.9
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.4e-66 255.4 243 57.6
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.3e-64 250.8 252 54.4
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 2.3e-64 250.0 352 43.8
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 6.6e-64 248.4 348 45.7
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 3.3e-63 246.1 240 54.6
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 9.5e-63 244.6 361 42.7
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.1e-61 241.1 352 42.0
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.4e-61 240.0 251 53.4
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 7.6e-60 235.0 326 42.3
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 3.8e-59 232.6 349 42.1
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.1e-58 231.1 352 39.5
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 4.6e-57 225.7 362 41.7
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 6.0e-57 225.3 259 48.3
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.3e-56 224.2 353 41.9
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.1e-55 221.1 355 40.6
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 1.9e-55 220.3 357 42.3
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.6e-55 218.8 379 38.8
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.1e-53 214.5 354 41.0
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.8e-53 213.8 353 39.4
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.4e-52 209.1 353 38.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 5.8e-52 208.8 354 40.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 6.4e-51 205.3 352 40.1
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 8.4e-51 204.9 404 36.9
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.1e-50 204.5 352 40.1
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 3.2e-50 203.0 329 41.0
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 3.2e-50 203.0 353 39.1
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 5.4e-50 202.2 216 50.5
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 6.0e-49 198.7 417 35.3
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 5.1e-48 195.7 354 39.5
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 1.5e-44 184.1 196 52.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 4.9e-43 179.1 257 45.5
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.4e-43 178.7 225 46.7
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.0e-40 171.4 191 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.5e-36 157.5 292 34.9
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 2.0e-36 157.1 272 36.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.0e-36 157.1 257 36.2
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.3e-35 154.5 273 34.8
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 4.9e-35 152.5 185 46.5
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-34 151.4 134 60.4
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.0e-28 130.6 133 55.6
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 6.1e-25 119.0 210 39.5
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 2.5e-23 113.6 232 34.1
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 1.6e-17 94.4 178 31.5
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 2.5e-15 87.0 58 84.5
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.4e-13 80.5 96 52.1
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 1.2e-12 78.2 60 65.0
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.2e-12 78.2 214 29.9
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.9e-12 75.9 123 39.8
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 1.1e-10 71.6 127 37.0
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 3.9e-08 63.2 63 54.0
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 8.8e-08 62.0 106 33.0
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.1e-07 61.6 77 48.1
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 4.8e-06 56.2 42 69.0


User provided reference genes

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