Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.5e-150 534.3 267 100.0
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 8.9e-100 367.5 259 75.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 8.4e-74 281.2 265 61.1
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.5e-50 201.8 269 47.2
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.2e-45 186.8 268 44.0
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 2.8e-45 186.4 266 44.4
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 5.3e-44 182.2 265 44.9
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 6.9e-44 181.8 266 43.2
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 9.0e-44 181.4 267 43.4
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 4.5e-43 179.1 268 42.9
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 7.7e-43 178.3 266 42.1
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.0e-42 177.9 266 42.1
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.9e-42 176.4 268 41.8
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.8e-42 176.0 263 41.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 6.5e-42 175.3 278 41.0
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 8.5e-42 174.9 266 40.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 9.4e-41 171.4 269 42.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.0e-39 167.9 267 41.6
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.4e-39 167.5 269 40.1
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 4.8e-37 159.1 266 44.4
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 8.2e-37 158.3 269 42.8
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.1e-36 157.9 270 42.6
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 3.4e-35 152.9 267 40.4
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.0e-34 151.4 271 42.1
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.8e-34 149.4 267 39.0
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 8.5e-34 148.3 268 38.8
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.7e-32 143.3 272 39.0
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 6.1e-32 142.1 274 39.4
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 7.9e-32 141.7 263 39.5
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.6e-30 136.7 264 37.9
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 7.4e-30 135.2 274 38.7
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 7.4e-30 135.2 259 38.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.8e-29 133.3 263 38.8
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 6.3e-29 132.1 267 36.3
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.3e-29 132.1 265 36.6
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 8.2e-29 131.7 256 37.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.1e-28 131.3 246 37.8
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.0e-28 128.6 265 36.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.1e-28 128.3 265 37.0
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.5e-27 125.9 250 35.2
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.9e-27 125.6 241 35.3
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 5.9e-27 125.6 245 37.6
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.9e-26 123.2 257 35.0
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.9e-26 123.2 255 34.5
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.9e-26 123.2 246 35.8
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 3.8e-26 122.9 267 36.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.0e-26 122.5 262 35.9
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.1e-25 121.3 252 36.5
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 4.2e-25 119.4 251 37.1
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 4.2e-25 119.4 241 36.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.2e-25 118.6 239 36.8
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 9.4e-25 118.2 250 37.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.7e-24 116.7 244 36.1
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.6e-24 116.3 244 36.1
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.7e-24 115.9 240 38.8
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 4.7e-24 115.9 264 35.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 6.1e-24 115.5 269 37.9
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.1e-24 115.5 243 37.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 8.0e-24 115.2 241 36.9
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 8.0e-24 115.2 258 36.4
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 8.0e-24 115.2 267 34.1
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.0e-23 114.8 264 34.5
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.0e-23 114.8 239 36.4
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 2.3e-23 113.6 269 34.2
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 6.7e-23 112.1 248 35.1
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 8.8e-23 111.7 269 32.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 8.8e-23 111.7 264 36.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.1e-22 111.3 235 34.5
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.1e-22 111.3 238 36.6
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-22 110.9 240 37.1
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.5e-22 110.9 240 37.1
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.6e-22 110.2 236 33.5
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.3e-22 109.8 275 32.0
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.4e-22 109.4 256 32.8
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 5.7e-22 109.0 278 32.4
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 9.7e-22 108.2 237 35.4
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 9.7e-22 108.2 253 33.6
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 8.2e-21 105.1 274 32.1
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.4e-20 103.6 261 30.3
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 2.4e-20 103.6 231 32.0
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.1e-20 102.8 272 32.4
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 4.1e-20 102.8 242 33.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 9.1e-20 101.7 237 35.0
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.2e-19 101.3 257 32.7
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.6e-19 100.9 256 34.4
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.7e-19 100.1 91 60.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 5.9e-19 99.0 246 33.3
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 5.9e-19 99.0 251 34.3
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.0e-18 98.2 242 32.6
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.0e-18 98.2 268 30.6
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.3e-18 97.8 250 31.2
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.7e-18 97.4 104 56.7
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.7e-18 97.4 240 33.8
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.7e-18 97.4 268 34.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-18 97.1 199 35.2
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 2.2e-18 97.1 251 33.9
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 6.5e-18 95.5 242 31.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.5e-17 94.4 269 32.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.5e-17 94.4 238 33.6
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.2e-16 91.3 259 30.9
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.6e-16 90.9 247 34.4
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.6e-16 89.7 262 31.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.7e-16 89.4 263 31.2
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.3e-15 87.0 274 27.4
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 3.0e-15 86.7 264 31.4
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.0e-15 86.3 240 30.4
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 6.8e-15 85.5 234 34.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.8e-15 85.1 276 27.2
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 8.8e-15 85.1 266 29.7
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.2e-14 84.7 200 33.5
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 2.6e-14 83.6 112 45.5
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 4.4e-14 82.8 268 29.9
Actinidia32073 Actinidia chinensis HOM05D003937 ORTHO05D012928 5.7e-14 82.4 142 38.7
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 7.5e-14 82.0 138 39.1
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 9.8e-14 81.6 200 34.0
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.2e-13 80.5 208 33.7
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 3.7e-13 79.7 244 29.1
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.8e-13 79.3 197 31.5
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.1e-12 76.6 107 44.9
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 4.1e-12 76.3 60 63.3
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.6e-11 74.3 272 26.8
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.0e-11 73.9 208 29.8
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 2.0e-11 73.9 181 34.3
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.7e-11 73.6 234 32.1
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 7.7e-11 72.0 236 29.2
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 7.7e-11 72.0 307 24.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-10 70.5 242 28.5
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.2e-10 70.5 207 28.5
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.9e-10 70.1 199 27.1
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 8.5e-10 68.6 60 55.0
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.5e-09 67.8 91 41.8
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.9e-09 67.4 248 29.0
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.7e-08 63.5 231 29.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 4.7e-08 62.8 117 35.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.0e-08 62.0 119 37.0
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 8.0e-08 62.0 53 60.4
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 8.0e-08 62.0 204 30.4
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.0e-07 61.6 119 37.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.0e-07 61.6 182 29.7
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.0e-07 61.6 124 32.3
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.4e-07 61.2 53 60.4
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.4e-07 61.2 105 38.1
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.4e-07 61.2 65 47.7
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.4e-07 61.2 202 31.7
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.8e-07 60.8 105 39.0
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.8e-07 60.8 105 39.0
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.0e-07 60.1 236 28.0
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 6.8e-07 58.9 136 30.9
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 8.8e-07 58.5 121 33.9
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.2e-06 58.2 53 54.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.5e-06 57.8 53 50.9
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.5e-06 57.8 53 50.9
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.5e-06 57.8 53 50.9
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.5e-06 57.8 70 41.4
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 1.5e-06 57.8 53 52.8
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.6e-06 57.0 169 29.6
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 4.4e-06 56.2 177 28.2
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 5.7e-06 55.8 53 50.9
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 9.8e-06 55.1 151 32.5


User provided reference genes

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