Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.3e-137 490.7 240 100.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.7e-98 361.3 243 79.4
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.6e-93 344.7 265 72.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.7e-92 341.7 249 75.5
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 7.5e-90 334.3 242 73.1
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 4.1e-88 328.6 243 71.6
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.9e-87 324.7 309 61.5
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.0e-86 323.9 242 70.2
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.0e-86 323.9 242 70.2
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.0e-86 322.4 243 69.5
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 8.6e-86 320.9 267 65.5
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 8.6e-86 320.9 267 65.5
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.5e-85 320.1 242 67.4
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 3.3e-85 318.9 243 68.7
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 4.3e-85 318.5 242 68.6
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.8e-84 315.8 243 69.1
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 3.6e-84 315.5 243 68.3
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 4.7e-84 315.1 242 68.2
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 8.0e-84 314.3 242 68.2
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.8e-83 313.2 242 68.2
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 3.1e-83 312.4 242 68.6
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.1e-83 312.4 242 66.5
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 6.8e-83 311.2 242 66.9
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.2e-82 310.5 246 65.0
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.2e-82 310.5 243 66.3
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.5e-82 310.1 243 66.3
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.0e-82 309.7 237 67.5
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.0e-82 309.7 243 65.8
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.4e-82 308.5 243 66.7
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 4.4e-82 308.5 242 66.5
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 4.4e-82 308.5 237 67.1
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 5.8e-82 308.1 242 66.9
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 7.5e-82 307.8 243 66.7
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 9.8e-82 307.4 242 65.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.3e-81 307.0 244 66.8
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.7e-81 306.6 243 65.4
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.2e-81 306.2 242 66.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 2.9e-81 305.8 243 65.4
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.9e-81 305.8 237 67.1
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.9e-81 305.8 242 66.5
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 6.4e-81 304.7 243 66.7
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 6.4e-81 304.7 242 65.7
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.4e-81 304.7 242 66.9
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.4e-81 304.7 242 67.4
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 8.3e-81 304.3 242 65.7
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 8.3e-81 304.3 242 66.5
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.4e-80 303.5 241 65.6
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.9e-80 303.1 246 63.0
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.9e-80 303.1 242 65.7
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 2.4e-80 302.8 243 65.4
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.2e-80 302.4 243 65.4
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 4.1e-80 302.0 238 66.8
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 5.4e-80 301.6 243 64.2
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 5.4e-80 301.6 236 66.5
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 5.4e-80 301.6 243 64.2
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 7.0e-80 301.2 243 65.8
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.6e-79 300.1 243 65.0
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 1.6e-79 300.1 242 65.3
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.5e-79 298.9 239 65.7
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.5e-79 298.9 243 63.8
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.0e-79 298.1 238 64.7
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.0e-78 297.4 236 65.7
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.3e-78 297.0 242 64.0
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.3e-78 296.2 250 62.4
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 8.6e-78 294.3 242 64.0
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.1e-77 293.9 239 63.2
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.5e-77 293.5 242 65.3
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.5e-77 292.7 238 63.0
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.3e-77 292.0 238 63.4
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 4.3e-77 292.0 238 63.0
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 5.6e-77 291.6 240 62.9
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 5.6e-77 291.6 237 63.3
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 5.6e-77 291.6 240 62.9
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.2e-76 290.4 240 62.1
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.2e-76 290.4 240 62.1
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.2e-76 290.4 233 64.8
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.6e-76 290.0 238 62.6
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 2.1e-76 289.7 238 62.6
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.8e-76 289.3 237 62.9
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.8e-76 289.3 237 62.9
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 2.8e-76 289.3 233 64.4
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.6e-76 288.9 233 64.8
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 8.1e-76 287.7 237 62.9
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-75 287.3 238 61.8
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 4.0e-75 285.4 240 62.9
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.0e-75 285.4 277 56.3
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.0e-75 285.4 283 55.5
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 8.9e-75 284.3 236 62.7
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.9e-75 284.3 277 56.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.9e-75 284.3 277 56.3
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 4.4e-74 282.0 243 60.9
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 5.8e-74 281.6 241 61.4
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 5.8e-74 281.6 241 61.4
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 2.4e-72 276.2 238 63.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.2e-71 273.9 236 61.4
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.6e-71 273.5 236 60.6
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.7e-71 272.7 236 59.7
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 3.9e-70 268.9 236 58.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 4.3e-69 265.4 219 65.3
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.2e-68 263.8 239 57.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 8.1e-68 261.2 237 59.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.1e-67 260.8 229 59.8
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.8e-65 252.3 238 55.0
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 4.9e-65 251.9 237 56.5
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 8.4e-65 251.1 221 61.1
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.9e-64 250.0 211 64.0
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.4e-64 249.6 226 58.8
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.2e-63 247.3 237 57.4
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 3.5e-63 245.7 212 61.3
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 4.6e-63 245.4 270 52.6
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 5.1e-62 241.9 240 53.8
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 3.3e-61 239.2 216 60.2
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.1e-59 234.2 187 64.2
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.4e-59 233.0 235 52.3
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 6.9e-59 231.5 241 53.1
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.2e-58 230.7 185 63.8
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.5e-58 230.3 192 62.5
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.5e-58 230.3 134 86.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.2e-57 226.5 134 85.8
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.9e-57 226.1 217 59.4
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 7.8e-55 218.0 182 63.7
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 7.8e-55 218.0 141 75.9
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 3.0e-54 216.1 239 48.5
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.9e-53 213.4 233 48.5
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 7.3e-53 211.5 215 56.3
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.6e-52 210.3 239 49.8
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 2.1e-52 209.9 238 51.7
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.8e-52 209.5 174 64.4
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 2.5e-45 186.4 232 45.7
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 5.6e-45 185.3 155 64.5
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 5.6e-45 185.3 155 64.5
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.4e-43 180.6 153 62.7
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.4e-43 180.6 153 62.7
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 9.0e-43 177.9 184 55.4
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.5e-42 177.2 127 68.5
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-37 161.0 166 56.6
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.9e-37 160.2 109 74.3
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 2.5e-32 143.3 111 64.0
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 9.3e-32 141.4 239 38.1
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 6.3e-28 128.6 176 43.8
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.4e-27 127.5 92 65.2
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.2e-26 124.4 86 72.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 7.6e-26 121.7 117 48.7
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 3.8e-25 119.4 80 78.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.3e-22 110.2 150 44.7
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-19 101.3 69 75.4
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.8e-19 100.5 71 71.8
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.6e-15 87.4 55 80.0
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.6e-15 87.4 55 80.0
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.6e-15 86.3 56 69.6
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 4.4e-13 79.3 43 81.4
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.2e-10 71.2 54 63.0
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 5.9e-10 68.9 44 70.5


User provided reference genes

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