Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.0e-295 1020.0 824 100.0
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 8.5e-250 867.5 824 89.8
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.0e-199 699.1 834 80.7
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.4e-198 696.0 698 78.1
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 4.9e-189 665.6 676 77.8
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.1e-175 619.8 834 72.5
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 4.6e-155 552.7 667 71.2
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 2.6e-150 537.0 821 55.2
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 4.9e-149 532.7 676 68.9
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 8.2e-144 515.4 681 68.6
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 5.8e-142 509.2 666 66.1
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 7.6e-142 508.8 662 68.0
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 1.1e-140 505.0 703 54.1
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 3.9e-138 496.5 666 56.2
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 8.7e-138 495.4 676 60.7
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 5.7e-137 492.7 791 71.7
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 1.3e-136 491.5 643 56.6
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 4.8e-136 489.6 649 66.4
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.6e-134 483.8 681 64.3
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 3.4e-134 483.4 653 66.5
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 7.7e-134 482.3 694 65.7
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 1.7e-133 481.1 653 65.5
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 6.5e-133 479.2 662 66.3
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 1.2e-131 474.9 656 64.5
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.2e-131 474.9 635 69.1
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 6.1e-131 472.6 635 69.3
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 8.8e-130 468.8 693 64.9
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 1.5e-129 468.0 658 50.5
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 4.3e-129 466.5 659 49.9
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 4.1e-127 459.9 636 52.0
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.2e-125 454.1 669 65.2
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 2.9e-125 453.8 633 68.4
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 3.8e-125 453.4 682 65.0
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 3.2e-124 450.3 685 42.3
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 4.7e-123 446.4 681 65.5
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 1.0e-122 445.3 698 63.5
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 2.3e-122 444.1 680 65.0
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 3.9e-122 443.4 660 66.1
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 1.1e-121 441.8 681 64.0
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 2.0e-121 441.0 635 67.1
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 1.7e-120 438.0 657 65.6
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 2.8e-120 437.2 651 65.3
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 9.1e-119 432.2 699 62.4
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 1.5e-118 431.4 838 51.4
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 2.9e-117 427.2 629 66.3
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 1.1e-116 425.2 658 64.3
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 1.2e-115 421.8 637 46.8
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 2.1e-115 421.0 662 62.1
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 8.0e-115 419.1 675 53.8
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 1.8e-114 417.9 669 60.2
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 6.7e-114 416.0 673 51.3
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 7.4e-113 412.5 666 62.0
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 3.7e-112 410.2 674 63.1
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 5.3e-111 406.4 659 60.4
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 7.0e-111 406.0 642 62.9
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.6e-110 404.8 674 62.8
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 2.0e-110 404.4 559 57.8
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 2.2e-109 401.0 681 61.5
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 5.0e-109 399.8 593 82.6
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 1.8e-106 391.3 651 61.8
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 6.8e-106 389.4 661 41.8
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 6.8e-106 389.4 652 54.6
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.5e-105 386.0 630 62.7
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 2.8e-104 384.0 649 44.2
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 6.3e-104 382.9 330 60.9
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.1e-103 380.6 622 63.0
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 4.1e-103 380.2 622 63.3
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.3e-103 379.8 622 63.0
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 5.9e-102 376.3 669 60.7
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.0e-101 375.6 651 52.8
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 1.3e-101 375.2 637 62.2
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 1.3e-101 375.2 675 59.3
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.0e-98 365.5 675 48.7
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.0e-98 365.5 634 56.9
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 1.4e-98 365.2 676 48.7
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 2.2e-96 357.8 569 64.3
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 8.3e-96 355.9 679 58.6
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 1.1e-95 355.5 648 61.1
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 1.2e-94 352.1 622 61.9
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 2.7e-94 350.9 630 60.6
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 2.5e-92 344.4 642 60.3
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 4.2e-92 343.6 697 58.2
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 5.5e-92 343.2 628 61.5
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 5.7e-89 333.2 637 59.8
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 4.9e-88 330.1 483 50.7
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 1.4e-87 328.6 521 68.1
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 6.6e-85 319.7 532 47.7
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.5e-84 317.8 670 56.9
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 6.1e-83 313.2 560 47.5
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 2.7e-78 297.7 450 73.1
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.3e-77 295.4 638 57.4
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 3.3e-76 290.8 680 54.7
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 9.5e-76 289.3 509 67.4
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.6e-75 288.5 289 54.0
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 1.9e-71 275.0 311 49.5
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 3.4e-65 254.2 262 52.3
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 3.4e-65 254.2 653 43.2
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 3.4e-65 254.2 200 62.0
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.6e-54 218.8 173 61.8
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 2.3e-53 214.9 165 64.8
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 6.2e-51 206.8 199 53.8
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.0e-49 201.8 170 58.2
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 3.8e-48 197.6 199 51.3
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 1.1e-47 196.1 335 83.9
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 5.1e-45 187.2 191 48.2
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 1.3e-43 182.6 502 44.8
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 6.4e-40 170.2 165 54.5
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 8.4e-40 169.9 108 75.0
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 3.2e-39 167.9 161 53.4
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 5.4e-39 167.2 212 43.9
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 5.4e-39 167.2 212 43.9
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 5.1e-37 160.6 196 41.8
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 1.2e-33 149.4 108 65.7
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 1.3e-32 146.0 139 59.7
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 2.5e-28 131.7 246 35.4
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 3.3e-28 131.3 107 61.7
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 1.1e-20 106.3 155 41.9
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 1.4e-18 99.4 95 49.5
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.0e-16 93.2 137 46.0
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 2.5e-12 78.6 47 78.7
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 1.1e-10 73.2 44 72.7
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 1.1e-10 73.2 95 43.2
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.4e-10 72.0 149 34.2
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.6e-09 68.6 143 33.6
Sp3g20430 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.4e-09 68.2 183 28.4
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 5.9e-09 67.4 201 25.9
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-08 66.6 168 32.1
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-08 66.6 168 32.1
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 1.3e-08 66.2 39 76.9
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.7e-08 65.9 317 24.0
PGR083G2098 Punica granatum HOM05D000424 ORTHO05D000355 1.7e-08 65.9 237 24.5
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 8.5e-08 63.5 44 68.2
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 8.5e-08 63.5 186 28.5
BcaB03g14655 Brassica carinata HOM05D000424 ORTHO05D000355 1.9e-07 62.4 213 26.8
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 1.9e-07 62.4 198 25.3
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.5e-07 62.0 238 26.1
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 3.2e-07 61.6 207 24.6
SGA_v2.0_scaffold73G24233 Striga asiatica HOM05D000424 ORTHO05D000355 3.2e-07 61.6 277 23.5
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 4.2e-07 61.2 223 25.1
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 5.5e-07 60.8 264 26.9
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 5.5e-07 60.8 201 24.4
DCAR_014305 Daucus carota HOM05D000534 ORTHO05D008146 5.5e-07 60.8 263 25.5
AL3G36970 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 7.2e-07 60.5 201 24.4
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 9.4e-07 60.1 293 22.5
CARHR098550 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.2e-06 59.7 148 26.4
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.2e-06 59.7 273 23.4
SEGI_01398 Sequoiadendron giganteum HOM05D003039 ORTHO05D009478 1.2e-06 59.7 273 24.2
SEGI_39646 Sequoiadendron giganteum HOM05D003039 ORTHO05D009478 1.2e-06 59.7 273 24.2
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 2.1e-06 58.9 263 23.2
RcHm_v2.0_Chr7g0215771 Rosa chinensis HOM05D006218 ORTHO05D007338 2.1e-06 58.9 271 21.8
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 2.1e-06 58.9 43 62.8
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 2.7e-06 58.5 278 24.8
BcaC01g01238 Brassica carinata HOM05D006232 ORTHO05D007746 3.6e-06 58.2 36 66.7
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 3.6e-06 58.2 198 23.7
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 4.7e-06 57.8 222 24.3
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 4.7e-06 57.8 222 24.3
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 4.7e-06 57.8 291 23.4
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 4.7e-06 57.8 308 22.7
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 4.7e-06 57.8 183 25.1
Zm00001eb373330 Zea mays HOM05D000424 ORTHO05D000355 4.7e-06 57.8 281 22.8
AT2G17525 Arabidopsis thaliana HOM05D006556 ORTHO05D008146 6.1e-06 57.4 264 24.6
Thhalv10020419m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 6.1e-06 57.4 186 25.8
Os01g0505500 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 6.1e-06 57.4 277 22.7
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 6.1e-06 57.4 198 23.2
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 6.1e-06 57.4 146 32.2
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 6.1e-06 57.4 238 25.2
BraA03t13435Z Brassica rapa HOM05D000424 ORTHO05D000355 7.9e-06 57.0 185 25.4
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.9e-06 57.0 308 22.7
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 7.9e-06 57.0 189 25.4


User provided reference genes

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