Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.1e-133 477.2 236 100.0
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.1e-133 477.2 236 100.0
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.4e-101 372.5 225 82.2
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 9.3e-101 370.5 225 81.8
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.8e-89 331.6 225 74.2
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 4.2e-85 318.5 225 71.6
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.7e-84 315.8 207 75.4
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 5.1e-83 311.6 226 69.5
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.5e-82 309.3 229 66.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 7.4e-82 307.8 215 72.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 9.7e-82 307.4 215 71.6
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.6e-81 306.6 193 77.2
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.8e-81 305.8 215 70.2
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.8e-81 305.8 193 75.1
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 8.2e-81 304.3 193 75.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.4e-80 302.8 217 69.1
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 4.1e-80 302.0 229 66.4
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 6.9e-80 301.2 225 66.2
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.5e-79 300.1 221 67.4
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 4.5e-79 298.5 226 63.3
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 4.5e-79 298.5 232 65.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 7.7e-79 297.7 224 66.1
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.3e-78 297.0 216 65.7
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.7e-78 296.6 215 66.5
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 3.8e-78 295.4 215 66.5
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 8.5e-78 294.3 208 70.2
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.4e-77 293.5 219 67.6
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.4e-77 293.5 208 70.2
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.4e-77 293.5 230 63.0
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.2e-77 292.0 226 62.8
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.2e-77 292.0 208 70.7
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 7.2e-77 291.2 230 61.7
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 9.4e-77 290.8 215 66.5
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-76 290.4 208 70.2
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 2.1e-76 289.7 221 63.8
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 3.6e-76 288.9 193 72.5
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 3.6e-76 288.9 216 66.7
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.6e-76 288.5 195 70.8
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.6e-76 288.5 195 70.8
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 7.9e-76 287.7 199 68.8
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.0e-75 287.3 207 68.1
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.0e-75 287.3 225 62.7
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.8e-75 286.6 195 70.3
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 2.3e-75 286.2 207 65.7
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.3e-75 286.2 195 70.3
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 2.3e-75 286.2 216 66.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.0e-75 285.8 194 70.6
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.0e-75 285.8 207 66.7
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 3.9e-75 285.4 211 65.4
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 5.1e-75 285.0 215 64.2
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 5.1e-75 285.0 208 65.9
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 6.7e-75 284.6 193 68.4
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 6.7e-75 284.6 216 65.3
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 8.8e-75 284.3 207 65.7
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.1e-74 283.9 230 61.7
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.5e-74 283.5 196 69.4
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.0e-74 283.1 215 64.7
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.7e-74 281.6 215 64.2
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 7.4e-74 281.2 188 71.3
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 9.7e-74 280.8 217 65.0
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.7e-73 280.0 216 64.8
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.2e-73 279.6 216 64.8
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 4.8e-73 278.5 215 63.7
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.8e-73 278.5 222 60.4
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.8e-73 278.5 193 68.4
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 8.2e-73 277.7 217 63.6
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 8.2e-73 277.7 242 60.3
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 8.2e-73 277.7 207 65.7
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.8e-72 276.6 216 63.9
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.8e-72 276.6 252 56.3
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 2.4e-72 276.2 216 64.4
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.1e-72 275.8 207 63.3
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 4.1e-72 275.4 207 63.8
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.2e-71 273.9 215 62.8
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.2e-71 273.9 215 62.8
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.0e-71 273.1 216 63.0
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.0e-71 273.1 208 64.9
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 4.5e-71 271.9 216 63.4
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 4.5e-71 271.9 216 63.4
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 5.9e-71 271.6 215 62.3
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 5.9e-71 271.6 207 67.1
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 7.7e-71 271.2 216 62.5
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 7.7e-71 271.2 211 62.1
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.3e-70 270.4 226 61.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.7e-70 270.0 215 62.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.2e-70 269.6 216 62.5
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 2.2e-70 269.6 195 66.2
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 3.8e-70 268.9 216 62.5
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 3.8e-70 268.9 216 62.5
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.8e-70 268.9 236 56.8
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.0e-70 268.5 239 55.2
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 5.0e-70 268.5 208 63.5
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 6.5e-70 268.1 207 62.8
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.1e-69 267.3 216 63.0
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.4e-69 266.9 215 61.4
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.9e-69 266.5 216 62.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.9e-68 261.2 161 77.6
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.0e-67 260.8 216 60.6
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 3.0e-67 259.2 214 60.7
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.9e-67 258.8 210 61.0
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.1e-67 258.5 194 64.4
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 8.8e-67 257.7 216 59.7
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.0e-66 256.5 193 64.2
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 5.7e-66 255.0 230 59.6
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 7.4e-66 254.6 193 61.7
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 9.7e-66 254.2 211 58.8
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.3e-65 253.8 211 58.3
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.7e-65 252.3 256 54.3
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.8e-65 251.9 215 57.7
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 6.3e-65 251.5 211 58.3
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.0e-63 246.5 199 62.8
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.6e-63 246.1 210 59.5
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 4.5e-63 245.4 212 57.1
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 4.5e-63 245.4 212 57.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.9e-63 245.0 189 63.0
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.3e-62 243.8 212 56.6
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.3e-62 243.8 212 56.6
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.3e-62 243.8 212 56.6
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.9e-62 242.7 157 71.3
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.5e-62 241.1 210 58.6
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 8.5e-62 241.1 193 61.7
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 4.2e-61 238.8 161 68.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 5.5e-61 238.4 207 58.5
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 9.4e-61 237.7 215 56.7
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.2e-60 237.3 221 56.6
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.2e-60 237.3 221 56.6
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 8.0e-60 234.6 208 53.8
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.8e-59 233.4 199 57.8
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 5.2e-59 231.9 190 63.7
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 7.5e-58 228.0 203 57.6
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.2e-57 226.5 234 49.1
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 2.4e-56 223.0 174 65.5
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.5e-53 213.0 222 52.3
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 5.5e-53 211.8 194 57.2
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 9.8e-50 201.1 151 64.9
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.2e-47 194.1 152 61.8
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.2e-44 184.1 129 64.3
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 6.1e-44 181.8 182 47.8
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 5.7e-42 175.3 207 45.4
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.7e-41 172.6 230 44.3
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 2.4e-40 169.9 130 66.9
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 2.7e-39 166.4 185 41.6
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 3.5e-39 166.0 121 62.0
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.7e-38 163.7 183 43.7
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 5.0e-38 162.2 121 62.0
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.6e-36 157.1 122 59.8
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.7e-36 155.6 122 54.9
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.2e-33 146.7 123 61.8
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.4e-27 127.5 164 41.5
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 7.3e-21 105.1 82 65.9
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 9.5e-21 104.8 74 70.3
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 2.1e-20 103.6 183 33.9
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.3e-17 91.7 134 45.5
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.3e-17 91.7 134 45.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 3.2e-16 89.7 59 69.5
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 3.2e-16 89.7 75 58.7
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.7e-15 86.7 90 50.0
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.5e-15 86.3 69 62.3
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 2.3e-11 73.6 47 72.3
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 3.5e-07 59.7 38 68.4
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 4.6e-07 59.3 60 55.0


User provided reference genes

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