Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 2409.4 1213 100.0
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1744.2 1229 75.6
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1652.1 1215 72.0
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1506.5 1216 65.1
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1500.0 1203 67.2
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1214 66.2
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1493.0 1203 65.3
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1488.4 1221 64.4
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1488.0 1223 65.0
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1487.6 1216 64.9
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1484.9 1206 65.5
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1478.4 1212 65.3
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1478.4 1211 65.1
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1476.1 1204 64.9
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1471.1 1206 65.3
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1457.6 1214 63.2
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1451.4 1221 64.1
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1450.6 1223 63.5
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1446.8 1216 63.1
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1445.3 1208 64.1
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1444.1 1206 62.9
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1440.2 1211 63.7
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1436.8 1211 63.1
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1431.8 1198 64.0
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1431.0 1199 64.4
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1428.3 1206 63.8
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1428.3 1212 62.8
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1424.5 1212 62.5
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1420.6 1210 62.7
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1419.8 1199 64.2
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1416.4 1199 64.1
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1414.8 1199 63.7
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1411.7 1214 62.8
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1410.6 1207 62.9
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1410.2 1213 62.4
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1410.2 1207 62.7
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1409.8 1211 62.0
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1406.7 1211 62.3
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1404.4 1208 63.5
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1404.0 1210 62.6
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1403.3 1201 62.4
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1402.5 1204 62.7
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1401.3 1210 61.7
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1400.6 1227 61.9
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1400.2 1208 62.7
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1399.8 1213 62.0
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1396.7 1204 62.6
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1395.2 1213 61.9
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1395.2 1210 62.0
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1393.3 1203 61.5
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1392.9 1204 62.0
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1392.5 1210 62.6
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1392.1 1209 62.4
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1385.9 1205 61.8
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1385.2 1205 61.5
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1382.1 1208 62.2
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1380.5 1209 61.6
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1379.0 1203 61.2
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1378.2 1208 61.8
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1377.8 1208 60.8
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1374.4 1204 61.2
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1374.0 1211 61.4
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1370.5 1239 60.5
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1367.4 1207 60.6
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1363.2 1212 60.6
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1362.8 1204 61.0
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1360.9 1208 60.8
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1359.0 1207 61.6
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1357.8 1206 60.1
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1355.9 1206 61.3
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1354.0 1206 60.6
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1350.9 1206 60.5
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1346.6 1202 60.2
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1345.9 1201 60.8
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1342.0 1202 60.1
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1338.6 1216 58.9
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1334.3 1202 60.1
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1321.2 1212 59.8
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1317.8 1205 59.8
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1313.9 920 72.5
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1308.9 1201 60.0
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1300.0 1210 59.3
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1276.9 1228 57.7
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1276.5 1211 59.3
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1266.1 917 70.0
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1265.0 1220 57.3
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1241.9 1227 57.5
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1236.9 1216 56.2
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1210.7 758 79.0
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1205.7 759 78.7
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1204.1 1213 54.2
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1190.3 915 67.2
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1181.8 1211 53.3
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1167.5 1200 53.4
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1165.6 1263 52.0
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1112.1 757 73.1
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 4.8e-310 1068.1 718 73.8
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 3.7e-302 1042.0 1081 55.6
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.1e-266 924.1 1145 51.0
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 1.3e-246 857.4 1211 41.8
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 8.9e-240 834.7 718 59.9
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 1.8e-232 810.4 1207 42.3
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.0e-227 794.7 539 74.2
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 6.1e-204 715.7 656 58.8
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 3.0e-203 713.4 751 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 8.2e-201 705.3 929 44.1
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 2.6e-170 604.0 400 75.8
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 2.3e-155 554.3 638 52.0
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 1.6e-151 541.6 1582 29.8
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 4.4e-77 294.3 467 43.0
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 7.5e-53 213.8 137 75.2
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 2.1e-47 195.7 205 56.1
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 3.8e-41 174.9 106 78.3
HanXRQChr15g0465771 Helianthus annuus HOM05D000346 ORTHO05D007312 2.8e-15 89.0 95 50.5
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 4.0e-14 85.1 65 58.5
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.0e-13 82.8 67 62.7
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.0e-13 82.8 67 62.7
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.7e-12 79.7 534 20.8
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 4.1e-11 75.1 77 53.2
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 6.6e-09 67.8 89 41.6
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.1e-06 60.5 76 40.8
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 1.8e-06 59.7 76 40.8


User provided reference genes

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