Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 1.2e-208 729.6 372 100.0
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 8.4e-165 583.9 365 82.7
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 7.2e-148 527.7 365 74.0
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 6.1e-147 524.6 365 74.0
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 1.3e-136 490.3 361 70.6
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 3.2e-116 422.5 367 60.2
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 1.2e-113 414.1 364 59.9
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 3.4e-113 412.5 366 59.3
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 2.8e-112 409.5 372 58.9
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 8.3e-112 407.9 368 59.8
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 5.4e-111 405.2 364 59.1
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 2.0e-110 403.3 365 60.3
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 2.7e-110 402.9 365 60.0
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 4.5e-110 402.1 369 59.1
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 1.1e-108 397.5 355 59.2
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.5e-108 396.4 374 56.7
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.5e-108 396.4 374 56.7
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 4.7e-107 392.1 366 57.4
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 1.0e-106 391.0 365 55.3
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.0e-106 391.0 353 58.6
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.0e-106 391.0 365 56.4
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.8e-106 390.2 352 58.8
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 4.0e-106 389.0 365 57.5
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 4.0e-106 389.0 368 57.3
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.2e-105 387.5 352 58.2
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 2.6e-105 386.3 353 59.2
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 9.8e-105 384.4 368 57.3
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 9.8e-105 384.4 367 57.2
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 2.9e-104 382.9 363 55.4
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 3.7e-104 382.5 334 60.5
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 6.4e-104 381.7 373 57.6
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.1e-103 380.9 365 55.9
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 1.8e-103 380.2 366 54.9
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 7.0e-103 378.3 365 56.2
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 2.0e-102 376.7 362 56.4
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 4.6e-102 375.6 353 58.1
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 1.3e-101 374.0 365 55.1
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 2.3e-101 373.2 361 55.4
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 2.5e-100 369.8 355 56.3
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 2.5e-100 369.8 363 55.1
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 3.3e-100 369.4 361 54.8
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 7.3e-100 368.2 368 54.1
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 1.2e-99 367.5 361 54.3
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.6e-99 367.1 313 65.2
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 2.3e-98 363.2 358 55.6
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 8.9e-98 361.3 363 53.2
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 8.9e-98 361.3 367 54.0
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 2.0e-97 360.1 363 53.2
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 3.4e-97 359.4 372 54.6
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 3.4e-97 359.4 362 52.2
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 5.8e-97 358.6 355 54.6
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 9.8e-97 357.8 363 53.2
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 3.7e-96 355.9 361 53.5
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 3.7e-96 355.9 364 53.3
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 1.9e-95 353.6 369 51.8
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 5.4e-95 352.1 370 49.7
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 1.2e-94 350.9 364 55.2
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 1.7e-93 347.1 369 50.9
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 3.9e-93 345.9 369 51.5
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 5.0e-93 345.5 369 52.3
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.5e-92 344.0 241 72.6
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.5e-92 344.0 241 72.6
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 1.9e-92 343.6 369 51.8
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 2.5e-92 343.2 365 53.4
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 7.3e-92 341.7 368 52.2
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 1.6e-91 340.5 364 48.9
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 3.1e-90 336.3 368 51.6
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 1.5e-89 334.0 362 50.8
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 4.4e-89 332.4 370 53.0
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 1.7e-88 330.5 363 49.9
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 3.7e-88 329.3 325 55.4
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 1.1e-87 327.8 358 50.3
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 3.2e-87 326.2 349 50.4
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 4.1e-87 325.9 359 53.2
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 1.0e-85 321.2 322 54.3
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 1.7e-85 320.5 356 52.0
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 5.1e-85 318.9 362 50.6
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 6.6e-85 318.5 359 52.4
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 4.3e-84 315.8 366 48.9
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 5.6e-84 315.5 359 52.1
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 2.8e-83 313.2 360 51.7
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 3.6e-83 312.8 354 49.7
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 1.1e-82 311.2 365 51.5
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 2.3e-82 310.1 346 49.7
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 6.8e-82 308.5 358 49.2
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 1.5e-81 307.4 357 51.0
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 1.5e-81 307.4 357 51.0
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 3.4e-81 306.2 361 49.9
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 9.9e-81 304.7 296 56.4
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 1.3e-80 304.3 372 48.7
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 1.4e-79 300.8 360 49.4
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.2e-78 297.7 361 47.6
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 3.6e-75 286.2 244 59.4
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 3.3e-68 263.1 281 48.4
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 4.3e-68 262.7 303 51.2
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 1.3e-67 261.2 304 52.0
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 1.9e-63 247.3 372 40.1
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.2e-63 246.1 240 56.2
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 1.0e-61 241.5 357 40.3
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 5.6e-60 235.7 352 41.5
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 1.8e-53 214.2 362 40.6
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 5.8e-49 199.1 212 48.6
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.2e-46 191.4 126 77.8
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.2e-46 191.4 126 77.8
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.5e-41 172.9 115 77.4
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 5.9e-41 172.6 237 46.0
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 2.2e-40 170.6 323 37.8
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 3.4e-33 146.7 178 48.3
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 1.1e-31 141.7 157 54.1
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 4.2e-31 139.8 137 52.6
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 6.1e-30 136.0 213 45.1
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 8.8e-29 132.1 394 27.7
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 2.0e-28 131.0 133 55.6
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 2.0e-25 120.9 311 31.8
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 1.1e-23 115.2 116 50.9
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 4.2e-23 113.2 335 30.1
MCO10G213 Micromonas commoda HOM05D006726 ORTHO05D008328 2.2e-11 74.3 267 25.1
CBR_g4449 Chara braunii HOM05D006726 ORTHO05D008328 3.2e-07 60.5 153 33.3
Cre09.g400997 Chlamydomonas reinhardtii HOM05D006726 ORTHO05D008328 7.2e-07 59.3 189 27.0


User provided reference genes

Program Settings