Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 4.8e-97 357.8 180 100.0
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 5.9e-47 191.4 135 74.8
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 2.9e-30 136.0 148 54.7
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 3.4e-18 95.9 146 44.5
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.7e-17 93.6 78 60.3
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 2.9e-17 92.8 125 47.2
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 4.1e-16 89.0 175 36.0
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 3.0e-14 82.8 94 50.0
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 5.0e-14 82.0 105 42.9
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 6.6e-14 81.6 153 40.5
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 8.6e-14 81.3 103 44.7
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 2.5e-13 79.7 111 42.3
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 3.3e-13 79.3 101 43.6
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 3.3e-13 79.3 86 47.7
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 4.3e-13 79.0 157 35.7
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 7.3e-13 78.2 104 46.2
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 9.5e-13 77.8 111 44.1
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 9.5e-13 77.8 97 43.3
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.6e-12 77.0 125 38.4
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 3.6e-12 75.9 105 45.7
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 4.7e-12 75.5 158 34.8
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 4.7e-12 75.5 143 42.7
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.1e-11 74.3 91 41.8
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 1.8e-11 73.6 85 48.2
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 2.3e-11 73.2 155 37.4
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 3.1e-11 72.8 155 37.4
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 4.0e-11 72.4 108 37.0
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 5.2e-11 72.0 128 40.6
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 5.2e-11 72.0 80 47.5
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 1.2e-10 70.9 94 43.6
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.5e-10 70.5 91 40.7
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 4.4e-10 68.9 145 38.6
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 5.8e-10 68.6 132 33.3
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 9.8e-10 67.8 119 38.7
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 1.7e-09 67.0 145 39.3
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 2.9e-09 66.2 161 33.5
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 3.7e-09 65.9 85 43.5
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 6.4e-09 65.1 70 47.1
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 1.1e-08 64.3 90 42.2
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 1.4e-08 63.9 54 55.6
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 4.1e-08 62.4 157 36.3
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 4.1e-08 62.4 74 45.9
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 4.1e-08 62.4 75 40.0
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 7.0e-08 61.6 70 48.6
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 1.2e-07 60.8 121 39.7
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 1.6e-07 60.5 158 32.9
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 2.0e-07 60.1 69 49.3
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 3.5e-07 59.3 90 42.2
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 6.0e-07 58.5 137 38.0
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 1.0e-06 57.8 103 38.8
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 1.3e-06 57.4 69 44.9
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 1.3e-06 57.4 109 35.8
unitig_32.g11513 Utricularia gibba HOM05D057528 ORTHO05D030710 1.3e-06 57.4 73 45.2
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.7e-06 57.0 42 64.3
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 2.3e-06 56.6 159 34.0
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.3e-06 56.6 94 40.4
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 3.0e-06 56.2 110 35.5
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 3.0e-06 56.2 143 34.3
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 5.0e-06 55.5 136 36.0
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 5.0e-06 55.5 73 41.1
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 5.0e-06 55.5 69 43.5
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 6.6e-06 55.1 94 39.4
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 8.6e-06 54.7 109 35.8


User provided reference genes

Program Settings