Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 0.0e+00 1294.6 646 100.0
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 3.5e-142 509.6 474 61.8
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.6e-132 475.7 474 57.8
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.9e-124 450.7 449 57.5
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.5e-124 450.3 470 55.3
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 2.7e-118 430.3 472 53.8
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 4.0e-114 416.4 465 52.0
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 4.5e-113 412.9 467 53.5
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.5e-113 412.9 448 52.2
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 4.5e-113 412.9 467 52.5
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 4.5e-113 412.9 467 53.3
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.7e-112 411.0 460 52.6
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 2.9e-112 410.2 441 54.2
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 4.9e-112 409.5 471 52.2
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 3.2e-111 406.8 470 51.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.6e-110 404.4 460 52.8
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.6e-110 404.4 466 50.9
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.5e-110 403.3 472 50.8
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 6.0e-110 402.5 466 51.9
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 7.9e-110 402.1 465 51.2
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.0e-109 401.7 467 51.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 8.7e-109 398.7 448 53.3
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.5e-108 397.1 466 51.1
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 4.3e-108 396.4 468 50.2
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.3e-108 396.4 467 50.5
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 4.3e-108 396.4 487 50.9
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 5.7e-108 396.0 467 51.8
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.3e-107 394.8 480 49.4
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.3e-107 394.8 465 51.6
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.3e-107 394.8 465 50.5
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.6e-107 394.4 467 51.0
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.6e-107 394.4 460 50.4
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.6e-107 394.4 460 50.4
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 1.6e-107 394.4 465 51.6
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 1.6e-107 394.4 465 51.2
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 2.8e-107 393.7 444 51.8
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 4.8e-107 392.9 465 50.8
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 4.8e-107 392.9 460 50.2
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 6.3e-107 392.5 444 52.0
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 8.2e-107 392.1 468 49.8
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.4e-106 391.3 477 49.3
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.4e-106 391.3 465 50.1
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.8e-106 391.0 477 49.3
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.8e-106 391.0 453 51.0
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.4e-106 390.6 447 51.7
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 3.1e-106 390.2 467 49.7
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.3e-106 389.4 467 50.1
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 6.9e-106 389.0 436 54.1
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 9.0e-106 388.7 453 51.9
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 9.0e-106 388.7 467 50.1
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.2e-105 388.3 468 52.4
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.2e-105 388.3 467 50.1
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.2e-105 388.3 454 51.1
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.5e-105 387.9 467 50.7
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 7.6e-105 385.6 468 51.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.0e-104 385.2 452 50.9
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.3e-104 384.8 470 50.0
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 1.3e-104 384.8 467 49.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 1.7e-104 384.4 448 51.1
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 2.9e-104 383.6 455 50.5
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 6.5e-104 382.5 448 50.9
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 8.4e-104 382.1 467 49.7
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.1e-103 381.7 459 50.3
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 4.2e-103 379.8 465 49.9
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 5.5e-103 379.4 467 50.5
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 1.2e-102 378.3 463 49.7
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.2e-102 378.3 468 49.8
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 7.9e-102 375.6 465 50.1
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.0e-101 375.2 469 48.2
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.0e-101 375.2 459 51.2
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.3e-101 374.8 471 49.0
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.0e-101 373.6 471 49.0
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 3.0e-101 373.6 465 49.2
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 3.9e-101 373.2 466 48.7
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 3.9e-101 373.2 465 50.8
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.1e-101 372.9 467 49.5
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 5.1e-101 372.9 465 48.0
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 6.7e-101 372.5 465 48.0
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 6.7e-101 372.5 467 49.9
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.1e-100 371.7 471 48.6
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.9e-100 370.9 291 68.4
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.9e-100 370.9 458 48.5
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 3.3e-100 370.2 468 49.6
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 5.7e-100 369.4 427 50.8
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.2e-99 367.5 467 49.3
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 2.8e-99 367.1 473 49.0
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 1.1e-98 365.2 436 50.2
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.4e-98 364.8 473 48.6
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.4e-98 364.8 450 50.0
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 4.5e-97 359.8 470 46.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 2.2e-96 357.5 442 49.1
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 6.5e-96 355.9 444 46.6
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 2.5e-95 354.0 466 49.1
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.2e-95 353.6 456 47.1
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 5.5e-95 352.8 467 47.3
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 7.2e-95 352.4 475 46.5
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 4.6e-94 349.7 447 46.5
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.4e-93 348.2 284 66.5
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.8e-93 347.8 456 46.1
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 5.1e-93 346.3 468 46.2
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 8.8e-93 345.5 456 44.5
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.0e-92 344.4 474 45.8
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 3.3e-92 343.6 480 44.6
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.3e-92 343.6 440 49.8
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 7.4e-92 342.4 468 47.6
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.7e-91 341.3 417 49.6
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 1.4e-90 338.2 440 47.7
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.8e-90 337.8 453 47.7
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 9.4e-87 325.5 467 42.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 3.6e-86 323.6 468 42.1
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.4e-85 321.6 460 46.1
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 2.3e-85 320.9 448 45.8
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 3.9e-85 320.1 453 45.0
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 3.9e-85 320.1 461 45.8
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 5.2e-85 319.7 468 45.1
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 8.8e-85 318.9 424 48.6
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.1e-84 318.5 459 45.1
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.5e-84 318.2 468 45.1
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 2.0e-84 317.8 465 44.9
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 2.0e-84 317.8 465 44.9
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 3.3e-84 317.0 457 45.1
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.7e-84 316.2 463 44.5
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 9.7e-84 315.5 444 46.4
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.3e-83 315.1 477 44.7
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 4.8e-83 313.2 457 44.6
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 1.1e-82 312.0 457 44.9
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-82 312.0 457 44.9
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.4e-82 311.6 457 44.9
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.4e-82 311.6 457 44.9
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 1.8e-82 311.2 457 44.9
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 5.3e-82 309.7 463 41.0
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.7e-80 304.7 468 39.5
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 2.1e-78 297.7 481 41.0
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 2.6e-76 290.8 242 62.0
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 5.0e-72 276.6 475 43.2
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 3.2e-71 273.9 412 44.2
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.0e-68 264.6 459 41.0
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.0e-64 252.3 454 40.5
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.1e-63 248.8 263 53.6
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.1e-63 248.8 279 48.4
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 1.2e-62 245.4 283 49.8
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.6e-62 245.0 291 46.7
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 7.5e-60 236.1 294 46.3
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 4.9e-59 233.4 359 42.3
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.5e-57 227.3 291 46.4
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 5.6e-55 219.9 351 41.6
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.2e-54 218.8 258 48.8
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.8e-50 204.9 360 40.3
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 1.2e-49 202.2 341 41.1
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 2.0e-49 201.4 302 40.4
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 4.7e-46 190.3 104 87.5
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.3e-45 188.0 105 86.7
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.1e-45 187.6 347 39.5
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 4.0e-45 187.2 354 37.3
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.4e-42 177.9 106 79.2
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.8e-28 130.2 259 36.3
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 6.0e-17 93.6 204 33.8
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 4.8e-14 84.0 192 32.3
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.4e-13 82.4 177 28.2
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 1.8e-13 82.0 63 66.7
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 2.2e-11 75.1 182 29.7
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 5.4e-10 70.5 65 49.2


User provided reference genes

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