Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 4.7e-212 741.1 421 100.0
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 4.2e-152 542.0 490 65.1
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.1e-136 490.7 408 70.1
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 5.3e-131 471.9 420 70.0
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 6.9e-131 471.5 269 82.2
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 5.8e-130 468.4 421 67.7
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.0e-129 467.6 269 81.8
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.9e-129 466.1 269 81.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 4.9e-129 465.3 260 83.8
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.1e-128 464.2 269 80.3
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.2e-128 462.2 418 69.1
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.2e-127 460.7 269 81.0
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.2e-127 460.7 434 64.3
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.1e-127 459.9 269 81.4
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.1e-127 459.9 382 68.8
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.7e-127 459.5 269 81.4
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 6.0e-127 458.4 269 81.0
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 6.0e-127 458.4 269 81.0
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 6.0e-127 458.4 269 81.0
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.8e-126 456.8 260 82.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.3e-126 456.4 257 84.8
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.3e-126 456.4 401 68.3
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 5.1e-126 455.3 331 72.8
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 5.1e-126 455.3 260 82.7
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 6.7e-126 454.9 267 80.5
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 2.5e-125 453.0 265 81.5
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 4.3e-125 452.2 257 81.7
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 5.7e-125 451.8 265 81.1
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 5.7e-125 451.8 258 83.3
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 7.4e-125 451.4 467 58.9
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 7.4e-125 451.4 269 80.7
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.3e-124 450.7 269 79.2
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.6e-124 450.3 265 80.8
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.2e-124 449.9 249 81.9
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.8e-124 449.5 268 78.4
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 8.2e-124 448.0 270 78.9
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.1e-123 447.6 268 78.0
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.1e-123 447.6 267 77.9
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.8e-123 446.8 292 73.6
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.8e-123 446.8 257 80.2
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 2.4e-123 446.4 269 78.8
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 5.3e-123 445.3 258 81.0
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.2e-122 444.1 258 80.6
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 3.4e-122 442.6 260 78.8
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 7.6e-122 441.4 454 57.7
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.0e-121 441.0 269 78.1
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.2e-121 439.9 267 77.2
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.2e-121 439.9 253 80.2
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 2.9e-121 439.5 384 63.5
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 5.0e-121 438.7 267 77.2
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 8.5e-121 438.0 267 78.3
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 8.5e-121 438.0 259 77.2
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 8.5e-121 438.0 460 59.8
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 8.5e-121 438.0 253 79.8
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 1.4e-120 437.2 241 84.2
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.4e-120 437.2 253 79.4
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.2e-120 436.0 450 54.2
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 5.5e-120 435.3 257 79.0
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 5.5e-120 435.3 346 71.4
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 5.5e-120 435.3 262 79.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 5.5e-120 435.3 267 77.2
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 7.2e-120 434.9 250 80.0
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.2e-120 434.9 259 78.8
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.2e-120 434.9 259 78.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 9.3e-120 434.5 392 67.3
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.2e-119 434.1 267 76.8
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.6e-119 433.7 261 78.5
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.6e-119 433.7 259 78.4
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 2.1e-119 433.3 257 77.8
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 3.6e-119 432.6 418 58.6
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 3.6e-119 432.6 253 79.1
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.1e-119 431.8 439 54.0
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.4e-118 430.6 422 64.5
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 2.3e-118 429.9 266 78.2
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 3.9e-118 429.1 257 77.8
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 3.9e-118 429.1 257 76.7
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 3.9e-118 429.1 266 75.9
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.9e-118 429.1 426 55.2
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.1e-117 427.6 450 62.9
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.9e-117 426.8 257 77.4
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 2.5e-117 426.4 250 80.0
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 9.7e-117 424.5 421 60.8
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.3e-116 424.1 259 77.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.2e-116 423.3 260 77.7
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 2.8e-116 422.9 264 75.8
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 3.7e-116 422.5 255 76.5
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 4.8e-116 422.2 264 74.6
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 6.3e-116 421.8 376 59.3
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 8.2e-116 421.4 258 77.5
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 1.1e-115 421.0 259 77.2
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.1e-115 421.0 266 76.3
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 1.8e-115 420.2 260 77.3
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 2.4e-115 419.9 241 81.3
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 3.1e-115 419.5 427 59.7
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 4.1e-115 419.1 430 62.3
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 6.9e-115 418.3 253 78.3
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 9.1e-115 417.9 253 78.7
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.6e-114 416.4 259 77.2
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 3.4e-114 416.0 257 76.7
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.9e-113 412.9 453 62.0
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.9e-113 412.9 259 76.4
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.8e-113 412.5 267 73.0
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.2e-112 409.5 249 75.9
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 4.7e-111 405.6 414 56.0
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 3.0e-110 402.9 258 73.3
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 8.8e-110 401.4 246 75.6
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 4.1e-107 392.5 388 59.8
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.9e-107 391.7 269 71.0
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 6.1e-103 378.6 257 69.3
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.5e-101 374.0 307 60.6
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.6e-101 373.2 263 70.0
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.2e-100 370.2 220 80.5
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 4.8e-100 369.0 266 67.3
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.5e-98 362.5 212 76.9
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 3.8e-97 359.4 210 81.4
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 2.5e-96 356.7 202 80.2
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.2e-93 347.8 184 84.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.8e-91 340.5 246 63.8
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.8e-91 340.5 247 63.6
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 4.2e-88 329.3 249 60.2
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.5e-80 304.3 181 81.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 7.2e-80 302.0 250 62.0
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.6e-79 300.8 250 59.6
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.1e-79 300.4 179 80.4
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.1e-79 300.4 172 84.3
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.1e-79 300.4 172 84.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.6e-79 299.7 253 58.5
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 4.9e-76 289.3 172 80.8
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 5.4e-75 285.8 170 80.6
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.3e-73 281.2 222 63.1
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.1e-72 278.1 171 78.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.5e-72 277.7 231 61.9
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 6.1e-71 272.3 168 78.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 5.4e-67 259.2 248 54.0
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.4e-62 244.6 151 75.5
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 5.2e-62 242.7 251 49.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.2e-62 242.7 189 60.3
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 9.2e-59 231.9 191 59.2
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 9.5e-56 221.9 262 48.5
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 4.4e-53 213.0 171 58.5
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.9e-52 210.3 185 62.2
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.6e-50 204.5 126 80.2
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.2e-47 194.9 238 46.6
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.8e-47 193.7 114 80.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 6.2e-47 192.6 110 82.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 5.2e-46 189.5 233 45.5
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.0e-45 187.6 176 54.0
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 6.4e-44 182.6 211 46.0
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 5.6e-40 169.5 128 60.9
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 9.6e-40 168.7 124 60.5
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 3.9e-33 146.7 83 74.7
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 7.6e-29 132.5 80 73.8
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 2.5e-16 90.9 54 72.2
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 4.3e-16 90.1 50 72.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 4.3e-16 90.1 50 72.0
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.0e-12 79.0 315 25.7
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.8e-06 58.2 117 31.6
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 6.9e-06 56.2 87 36.8


User provided reference genes

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