Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 1.4e-110 402.9 202 100.0
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 7.1e-25 118.2 72 77.8
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 1.5e-22 110.5 72 73.6
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 1.6e-21 107.1 68 72.1
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 6.2e-21 105.1 78 66.7
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.4e-20 104.0 72 72.2
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 5.3e-20 102.1 68 66.2
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 9.0e-20 101.3 72 69.4
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 1.0e-18 97.8 65 70.8
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 1.1e-17 94.4 68 63.2
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 1.1e-17 94.4 57 75.4
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 1.4e-17 94.0 72 62.5
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 1.4e-17 94.0 58 74.1
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.9e-17 93.6 68 66.2
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.9e-17 93.6 69 66.7
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 5.5e-17 92.0 57 75.4
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 9.3e-17 91.3 68 61.8
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 9.3e-17 91.3 69 68.1
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 9.3e-17 91.3 72 62.5
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 1.2e-16 90.9 56 71.4
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 1.6e-16 90.5 62 71.0
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.1e-16 90.1 65 67.7
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 3.5e-16 89.4 57 75.4
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.0e-16 88.6 56 73.2
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.0e-16 88.6 56 73.2
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 1.8e-15 87.0 72 56.9
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 2.3e-15 86.7 73 61.6
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 2.3e-15 86.7 57 73.7
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 3.9e-15 85.9 66 62.1
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 3.9e-15 85.9 68 66.2
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 6.7e-15 85.1 63 61.9
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 6.7e-15 85.1 63 61.9
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.1e-14 84.3 56 71.4
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 2.5e-14 83.2 56 71.4
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 3.3e-14 82.8 62 61.3
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 4.3e-14 82.4 69 62.3
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 5.7e-14 82.0 56 73.2
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 5.7e-14 82.0 56 73.2
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 7.4e-14 81.6 49 75.5
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 7.4e-14 81.6 55 74.5
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 9.6e-14 81.3 55 74.5
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 1.3e-13 80.9 61 63.9
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 2.1e-13 80.1 57 63.2
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 3.7e-13 79.3 55 70.9
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 4.8e-13 79.0 58 65.5
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 4.8e-13 79.0 56 60.7
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 6.2e-13 78.6 56 73.2
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 1.1e-12 77.8 61 55.7
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 2.4e-12 76.6 61 59.0
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 4.1e-12 75.9 61 60.7
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 5.3e-12 75.5 72 55.6
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 6.9e-12 75.1 57 59.6
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 6.9e-12 75.1 58 58.6
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 9.0e-12 74.7 56 67.9
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 9.0e-12 74.7 57 59.6
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 1.2e-11 74.3 68 51.5
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.0e-11 73.6 63 54.0
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.6e-11 73.2 57 64.9
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.6e-11 73.2 57 64.9
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 1.0e-10 71.2 56 58.9
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 1.3e-10 70.9 59 57.6
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.7e-10 70.5 70 54.3
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 2.2e-10 70.1 59 57.6
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.9e-10 69.7 57 59.6
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 3.8e-10 69.3 58 58.6
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 3.8e-10 69.3 56 57.1
ECA248G3328 Erigeron canadensis HOM05D000152 ORTHO05D001046 5.0e-10 68.9 53 58.5
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 5.0e-10 68.9 54 63.0
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 1.1e-09 67.8 59 55.9
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 1.1e-09 67.8 59 55.9
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 1.4e-09 67.4 59 55.9
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 3.2e-09 66.2 55 54.5
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 4.2e-09 65.9 59 54.2
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 9.3e-09 64.7 59 54.2
SGA_v2.0_scaffold114G31816 Striga asiatica HOM05D007721 ORTHO05D009811 1.2e-08 64.3 48 60.4
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 3.5e-08 62.8 61 52.5
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 6.1e-08 62.0 59 52.5
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 1.0e-07 61.2 38 71.1
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 1.0e-07 61.2 38 71.1
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 2.3e-07 60.1 56 53.6
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 6.7e-07 58.5 59 49.2
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 1.1e-06 57.8 58 50.0
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 5.7e-06 55.5 58 48.3


User provided reference genes

Program Settings