Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04121 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 1.4e-207 726.1 366 100.0
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 4.9e-117 425.2 281 77.9
CSS0013997 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 2.6e-94 349.7 281 65.5
Actinidia16351 Actinidia chinensis HOM05D003775 ORTHO05D004314 7.2e-92 341.7 281 63.7
Dinv36216 Davidia involucrata HOM05D003775 ORTHO05D004314 1.1e-87 327.8 283 62.9
Hma1.2p1_1694F.1_g298010 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 4.8e-64 249.2 282 53.9
Hma1.2p1_1200F.1_g266540 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 1.1e-63 248.1 282 53.5
Migut.N02350 Erythranthe guttata HOM05D003775 ORTHO05D004314 7.0e-63 245.4 293 48.8
Lsat_1_v5_gn_6_26100 Lactuca sativa HOM05D003775 ORTHO05D004314 1.3e-61 241.1 287 47.4
Lj1A317T44 Lonicera japonica HOM05D003775 ORTHO05D004314 5.0e-61 239.2 292 51.0
MSTRG.12454 Avicennia marina HOM05D003775 ORTHO05D004314 9.8e-57 224.9 288 46.9
Oeu061301.1 Olea europaea HOM05D003775 ORTHO05D004314 8.3e-56 221.9 286 49.0
TAR633G1887 Trochodendron aralioides HOM05D003775 ORTHO05D004314 4.1e-55 219.5 303 47.5
Nitab4.5_0002726g0070 Nicotiana tabacum HOM05D003775 ORTHO05D004314 7.0e-55 218.8 285 47.7
TAR636G2085 Trochodendron aralioides HOM05D003775 ORTHO05D004314 1.6e-54 217.6 303 46.9
Nn3g16658 Nelumbo nucifera HOM05D003775 ORTHO05D004314 1.7e-53 214.2 323 44.6
PGSC0003DMG400013186 Solanum tuberosum HOM05D003775 ORTHO05D004314 1.7e-53 214.2 295 48.1
Solyc11g065210.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 2.3e-53 213.8 291 47.8
Sopen11g024920 Solanum pennellii HOM05D003775 ORTHO05D004314 3.8e-53 213.0 291 47.8
Nitab4.5_0006878g0040 Nicotiana tabacum HOM05D003775 ORTHO05D004314 6.6e-53 212.2 291 47.1
CAN.G633.2 Capsicum annuum HOM05D003775 ORTHO05D004314 1.1e-52 211.5 284 48.2
Peaxi162Scf00004g03811 Petunia axillaris HOM05D003775 ORTHO05D004314 7.3e-52 208.8 274 48.2
SalBow6G0244 Salvia bowleyana HOM05D003775 ORTHO05D004314 7.3e-52 208.8 284 43.0
Dinv22154 Davidia involucrata HOM05D003775 ORTHO05D004314 3.6e-51 206.5 160 68.1
Aqoxy6G01356 Aquilegia oxysepala HOM05D003775 ORTHO05D004314 4.7e-51 206.1 292 45.9
Nn2g15064 Nelumbo nucifera HOM05D003775 ORTHO05D004314 6.1e-51 205.7 294 44.9
SGA_v2.0_scaffold42G16081 Striga asiatica HOM05D003775 ORTHO05D004314 6.8e-50 202.2 295 44.7
Hund18010 Selenicereus undatus HOM05D003775 ORTHO05D004314 1.1e-47 194.9 293 43.3
HanXRQChr13g0401471 Helianthus annuus HOM05D003775 ORTHO05D004314 1.8e-47 194.1 282 43.3
GSVIVG01000859001 Vitis vinifera HOM05D003775 ORTHO05D004314 5.4e-47 192.6 304 42.4
Sabra03G0149800 Salix brachista HOM05D003775 ORTHO05D004314 1.6e-46 191.0 302 42.4
Potri.003G202800 Populus trichocarpa HOM05D003775 ORTHO05D004314 1.7e-45 187.6 296 42.2
CiPaw.14G005400 Carya illinoinensis HOM05D003775 ORTHO05D004314 5.0e-45 186.0 296 41.6
PSO339G4517 Papaver somniferum HOM05D003775 ORTHO05D004314 6.6e-45 185.7 294 39.5
TWI15G0411 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 6.6e-45 185.7 307 39.4
MBI16_g10269_MAGBIO Magnolia biondii HOM05D003775 ORTHO05D004314 1.9e-44 184.1 306 41.2
MD02G1296700 Malus domestica HOM05D003775 ORTHO05D004314 3.3e-44 183.3 295 40.3
TWI63G1774 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 3.3e-44 183.3 299 41.8
MD07G1027400 Malus domestica HOM05D003775 ORTHO05D004314 4.3e-44 183.0 296 42.2
Prupe.2G027700 Prunus persica HOM05D003775 ORTHO05D004314 4.3e-44 183.0 296 40.9
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 1.2e-43 181.4 300 40.0
PSO384G3184 Papaver somniferum HOM05D003775 ORTHO05D004314 1.6e-43 181.0 298 40.6
RcHm_v2.0_Chr1g0319451 Rosa chinensis HOM05D003775 ORTHO05D004314 2.1e-43 180.6 304 39.1
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 6.2e-43 179.1 306 39.9
CSS0036530 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 8.0e-43 178.7 295 41.4
CSS0045062 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 8.0e-43 178.7 295 41.4
FvH4_7g02050 Fragaria vesca HOM05D003775 ORTHO05D004314 1.0e-42 178.3 306 39.9
Haze_03108 Corylus avellana HOM05D003775 ORTHO05D004314 2.3e-42 177.2 299 42.1
Atru.chr11.2505 Acer truncatum HOM05D003775 ORTHO05D004314 4.0e-42 176.4 307 40.7
Cfa010842 Carpinus fangiana HOM05D003775 ORTHO05D004314 6.8e-42 175.6 304 40.1
Ca_00245_v3 Cicer arietinum L. HOM05D003775 ORTHO05D004314 1.2e-41 174.9 289 40.1
Manes.04G163700 Manihot esculenta HOM05D003775 ORTHO05D004314 1.2e-41 174.9 300 38.0
AUR62014380 Chenopodium quinoa HOM05D003775 ORTHO05D004314 1.5e-41 174.5 295 39.7
FAN01G0886 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.5e-41 174.5 306 39.9
Gohir.A06G159000 Gossypium hirsutum HOM05D003775 ORTHO05D004314 1.5e-41 174.5 297 39.1
Glyma.09G225200 Glycine max HOM05D003775 ORTHO05D004314 2.6e-41 173.7 295 39.0
Actinidia06274 Actinidia chinensis HOM05D003775 ORTHO05D004314 9.8e-41 171.8 298 39.6
AUR62019122 Chenopodium quinoa HOM05D003775 ORTHO05D004314 9.8e-41 171.8 295 38.6
Gorai.010G192300 Gossypium raimondii HOM05D003775 ORTHO05D004314 9.8e-41 171.8 297 38.4
Manes.11G002300 Manihot esculenta HOM05D003775 ORTHO05D004314 9.8e-41 171.8 307 36.5
Rhsim07G0061800 Rhododendron simsii HOM05D003775 ORTHO05D004314 9.8e-41 171.8 315 41.0
Eucgr.G03263 Eucalyptus grandis HOM05D003775 ORTHO05D004314 1.3e-40 171.4 294 40.1
Psat7g201120 Pisum sativum HOM05D003775 ORTHO05D004314 1.3e-40 171.4 293 41.0
Gohir.D06G164900 Gossypium hirsutum HOM05D003775 ORTHO05D004314 1.7e-40 171.0 297 38.4
Dinv32058 Davidia involucrata HOM05D003775 ORTHO05D004314 2.2e-40 170.6 294 40.5
Sc14g0005810 Simmondsia chinensis HOM05D003775 ORTHO05D004314 2.2e-40 170.6 290 39.0
COL.COLO4_25844 Corchorus olitorius HOM05D003775 ORTHO05D004314 3.7e-40 169.9 300 38.0
EL10Ac1g00474 Beta vulgaris HOM05D003775 ORTHO05D004314 1.1e-39 168.3 293 38.9
Ciclev10031129m.g Citrus clementina HOM05D003775 ORTHO05D004314 1.1e-39 168.3 308 39.3
Sabra01G0017100 Salix brachista HOM05D003775 ORTHO05D004314 1.1e-39 168.3 303 38.9
Phvul.011G014600 Phaseolus vulgaris HOM05D003775 ORTHO05D004314 3.2e-39 166.8 290 38.3
Lalb_Chr19g0140171 Lupinus albus HOM05D003775 ORTHO05D004314 4.1e-39 166.4 293 39.9
Medtr2g060050 Medicago truncatula HOM05D003775 ORTHO05D004314 4.1e-39 166.4 303 39.6
FAN10G1046 Fragaria x ananassa HOM05D003775 ORTHO05D004314 2.0e-38 164.1 309 39.2
Cpa.g.sc197.14 Carica papaya HOM05D003775 ORTHO05D004314 3.5e-38 163.3 304 38.5
Aa31LG2G19490 Aethionema arabicum HOM05D003775 ORTHO05D004314 6.0e-38 162.5 309 38.2
Migut.O00905 Erythranthe guttata HOM05D003775 ORTHO05D004314 6.0e-38 162.5 291 39.5
PGR031G2286 Punica granatum HOM05D003775 ORTHO05D004314 7.8e-38 162.2 308 37.7
Thecc.10G005200 Theobroma cacao HOM05D003775 ORTHO05D004314 1.3e-37 161.4 296 39.5
Lj3g0020763 Lotus japonicus HOM05D003775 ORTHO05D004314 1.7e-37 161.0 291 38.1
Oeu061300.1 Olea europaea HOM05D003775 ORTHO05D004314 1.7e-37 161.0 147 58.5
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 2.3e-37 160.6 304 39.1
Cc01_g06210 Coffea canephora HOM05D003775 ORTHO05D004314 3.0e-37 160.2 126 63.5
QL04p013175 Quercus lobata HOM05D003775 ORTHO05D004314 5.0e-37 159.5 294 39.8
Migut.N01820 Erythranthe guttata HOM05D003775 ORTHO05D004314 8.6e-37 158.7 291 39.2
Ah.05g171640 Amaranthus hybridus HOM05D003775 ORTHO05D004314 1.5e-36 157.9 298 37.2
ClCG02G013920 Citrullus lanatus HOM05D003775 ORTHO05D004314 2.5e-36 157.1 321 35.2
Duzib114G0793 Durio zibethinus HOM05D003775 ORTHO05D004314 2.5e-36 157.1 295 37.6
TPR.G20248 Trifolium pratense HOM05D003775 ORTHO05D004314 2.5e-36 157.1 288 39.2
VMungo1127G0258 Vigna mungo HOM05D003775 ORTHO05D004314 3.3e-36 156.8 286 36.7
DCAR_002120 Daucus carota HOM05D003775 ORTHO05D004314 4.3e-36 156.4 302 38.7
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 7.3e-36 155.6 290 36.6
arahy.Tifrunner.gnm1.ann1.F7MMZ3 Arachis hypogaea HOM05D003775 ORTHO05D004314 1.6e-35 154.5 299 38.8
THA.LOC104819115 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 2.1e-35 154.1 296 37.5
MELO3C011731.2 Cucumis melo HOM05D003775 ORTHO05D004314 2.8e-35 153.7 307 35.5
DCAR_031617 Daucus carota HOM05D003775 ORTHO05D004314 2.8e-35 153.7 288 38.2
THA.LOC104826715 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 2.8e-35 153.7 307 36.5
CsaV3_5G006240 Cucumis sativus L. HOM05D003775 ORTHO05D004314 4.7e-35 152.9 307 36.2
HPP92_025001 Vanilla planifolia HOM05D003775 ORTHO05D004314 8.1e-35 152.1 307 34.5
Sed0002392 Sechium edule HOM05D003775 ORTHO05D004314 1.1e-34 151.8 302 35.8
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 2.3e-34 150.6 316 36.4
Lj7C578T6 Lonicera japonica HOM05D003775 ORTHO05D004314 3.1e-34 150.2 315 37.1
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 5.2e-34 149.4 289 35.6
arahy.Tifrunner.gnm1.ann1.IE4AJN Arachis hypogaea HOM05D003775 ORTHO05D004314 6.8e-34 149.1 316 35.4
AT4G30890 Arabidopsis thaliana HOM05D003775 ORTHO05D004314 8.9e-34 148.7 308 36.0
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 1.5e-33 147.9 291 36.1
A01p07290 Brassica napus HOM05D003775 ORTHO05D004314 2.6e-33 147.1 321 34.6
Sed0004278 Sechium edule HOM05D003775 ORTHO05D004314 3.4e-33 146.7 296 35.8
BcaNung02733 Brassica carinata HOM05D003775 ORTHO05D004314 5.8e-33 146.0 211 43.6
BolC1t00794H Brassica oleracea HOM05D003775 ORTHO05D004314 9.8e-33 145.2 325 34.2
C01p08050 Brassica napus HOM05D003775 ORTHO05D004314 1.3e-32 144.8 325 34.2
C07p58270 Brassica napus HOM05D003775 ORTHO05D004314 2.9e-32 143.7 302 36.4
BraA01t00678Z Brassica rapa HOM05D003775 ORTHO05D004314 3.7e-32 143.3 143 51.0
AL7G21200 Arabidopsis lyrata HOM05D003775 ORTHO05D004314 4.9e-32 142.9 308 36.0
BcaNung03431 Brassica carinata HOM05D003775 ORTHO05D004314 1.1e-31 141.7 143 50.3
Sp7g28760 Schrenkiella parvula HOM05D003775 ORTHO05D004314 1.4e-31 141.4 200 41.5
BcaC09g51876 Brassica carinata HOM05D003775 ORTHO05D004314 1.9e-31 141.0 141 50.4
BolC7t46285H Brassica oleracea HOM05D003775 ORTHO05D004314 2.4e-31 140.6 302 36.1
CANSAT80G1378 Cannabis sativa HOM05D003775 ORTHO05D004314 2.4e-31 140.6 301 35.2
Thhalv10025311m.g Eutrema salsugineum HOM05D003775 ORTHO05D004314 2.4e-31 140.6 143 51.0
Zm00001eb329890 Zea mays HOM05D003775 ORTHO05D004314 3.2e-31 140.2 312 34.6
Carub.0007s0965 Capsella rubella HOM05D003775 ORTHO05D004314 4.1e-31 139.8 299 34.8
CARHR238790 Cardamine hirsuta HOM05D003775 ORTHO05D004314 4.1e-31 139.8 144 52.8
ATR0721G058 Amborella trichopoda HOM05D003775 ORTHO05D004314 9.2e-31 138.7 230 39.1
Psat7g109680 Pisum sativum HOM05D003775 ORTHO05D004314 9.2e-31 138.7 108 63.9
Cc02_g29350 Coffea canephora HOM05D003775 ORTHO05D004314 1.2e-30 138.3 306 32.7
BcaB03g12665 Brassica carinata HOM05D003775 ORTHO05D004314 2.1e-30 137.5 122 55.7
HanXRQChr01g0020841 Helianthus annuus HOM05D003775 ORTHO05D004314 3.5e-30 136.7 303 37.0
BraA08t33864Z Brassica rapa HOM05D003775 ORTHO05D004314 6.0e-30 136.0 122 55.7
C03p88460 Brassica napus HOM05D003775 ORTHO05D004314 1.0e-29 135.2 122 54.9
SGA_v2.0_scaffold354G49741 Striga asiatica HOM05D003775 ORTHO05D004314 1.0e-29 135.2 304 35.5
BcaC01g01133 Brassica carinata HOM05D003775 ORTHO05D004314 1.3e-29 134.8 122 54.9
BolC3t21154H Brassica oleracea HOM05D003775 ORTHO05D004314 1.3e-29 134.8 122 54.9
Sc10g0004200 Simmondsia chinensis HOM05D003775 ORTHO05D004314 1.3e-29 134.8 294 37.1
A08p19030 Brassica napus HOM05D003775 ORTHO05D004314 1.7e-29 134.4 122 55.7
CDE02G2263 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 3.9e-29 133.3 120 57.5
Zm00001eb110870 Zea mays HOM05D003775 ORTHO05D004314 3.9e-29 133.3 298 32.9
SalBow6G4543 Salvia bowleyana HOM05D003775 ORTHO05D004314 1.1e-28 131.7 138 52.9
Lsat_1_v5_gn_1_98220 Lactuca sativa HOM05D003775 ORTHO05D004314 2.5e-28 130.6 104 64.4
CDE09G1021 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 4.3e-28 129.8 287 34.5
Nitab4.5_0000316g0220 Nicotiana tabacum HOM05D003775 ORTHO05D004314 1.6e-27 127.9 304 33.6
Nitab4.5_0001543g0030 Nicotiana tabacum HOM05D003775 ORTHO05D004314 3.6e-27 126.7 312 32.7
SEGI_11797 Sequoiadendron giganteum HOM05D003775 ORTHO05D004314 5.2e-26 122.9 120 53.3
Duzib106G0584 Durio zibethinus HOM05D003775 ORTHO05D004314 4.9e-24 116.3 93 64.5
Os07g0661300 Oryza sativa ssp. japonica HOM05D003775 ORTHO05D004314 1.4e-23 114.8 123 48.8
unitig_0.g1004 Utricularia gibba HOM05D001495 ORTHO05D004314 2.1e-22 110.9 153 41.8
MD02G1296600 Malus domestica HOM05D003775 ORTHO05D004314 6.0e-22 109.4 135 47.4
Mapoly0004s0306 Marchantia polymorpha HOM05D003775 ORTHO05D004314 6.0e-22 109.4 251 34.7
Actinidia06930 Actinidia chinensis HOM05D003775 ORTHO05D004314 1.7e-21 107.8 86 62.8
HanXRQChr02g0051501 Helianthus annuus HOM05D003775 ORTHO05D004314 1.7e-21 107.8 262 34.7
Pp3c16_4180 Physcomitrium patens HOM05D003775 ORTHO05D004314 9.6e-20 102.1 116 45.7
ECA233G2787 Erigeron canadensis HOM05D003775 ORTHO05D004314 6.9e-18 95.9 187 35.8
Lalb_Chr01g0000591 Lupinus albus HOM05D003775 ORTHO05D004314 2.6e-17 94.0 232 35.3
CBR_g66808 Chara braunii HOM05D003775 ORTHO05D004314 3.2e-15 87.0 120 42.5
BraA03t15080Z Brassica rapa HOM05D003775 ORTHO05D004314 5.4e-15 86.3 61 68.9
vmacro13720 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 2.1e-14 84.3 243 34.2
PSO447G0106 Papaver somniferum HOM05D003775 ORTHO05D004314 1.7e-13 81.3 102 46.1
unitig_22.g6197 Utricularia gibba HOM05D003775 ORTHO05D004314 1.9e-12 77.8 72 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2031 Anthoceros agrestis HOM05D003775 ORTHO05D004314 2.6e-09 67.4 144 32.6
Dinv39690 Davidia involucrata HOM05D003775 ORTHO05D004314 1.4e-07 61.6 205 30.2
Lsat_1_v5_gn_4_28840 Lactuca sativa HOM05D003775 ORTHO05D004314 1.6e-06 58.2 45 60.0


User provided reference genes

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