Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 2.8e-113 412.1 235 100.0
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 1.1e-109 400.2 235 94.0
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 2.7e-108 395.6 235 90.2
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.1e-106 390.2 235 88.1
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.1e-106 390.2 235 90.6
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 4.3e-106 388.3 233 88.0
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 5.6e-106 387.9 233 89.3
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 7.3e-106 387.5 235 87.7
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 9.6e-106 387.1 229 91.7
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 9.6e-106 387.1 235 86.8
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.2e-105 386.7 235 88.1
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 3.6e-105 385.2 232 87.1
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 4.7e-105 384.8 235 88.9
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 4.7e-105 384.8 235 86.8
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 4.7e-105 384.8 235 86.8
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 8.1e-105 384.0 229 88.6
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.8e-104 382.9 235 86.0
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.8e-104 382.9 233 88.8
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 2.4e-104 382.5 235 88.9
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.4e-104 382.5 235 85.1
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.4e-104 382.5 235 86.4
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.4e-104 382.5 235 88.9
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 4.0e-104 381.7 235 86.4
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.0e-104 381.7 232 87.1
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.0e-104 381.7 235 86.0
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 4.0e-104 381.7 231 91.3
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 6.8e-104 380.9 230 93.5
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 8.9e-104 380.6 232 87.1
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 8.9e-104 380.6 235 86.0
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 8.9e-104 380.6 235 86.0
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 8.9e-104 380.6 231 87.9
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 2.0e-103 379.4 235 86.4
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.6e-103 379.0 235 85.1
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 2.6e-103 379.0 231 86.1
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 3.4e-103 378.6 235 87.7
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.4e-103 378.6 233 86.7
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 3.4e-103 378.6 233 86.3
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.4e-103 378.6 233 86.3
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 4.4e-103 378.3 233 86.7
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 4.4e-103 378.3 235 83.8
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 5.8e-103 377.9 235 84.3
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 5.8e-103 377.9 235 85.1
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 7.6e-103 377.5 235 85.5
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 9.9e-103 377.1 235 84.7
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.3e-102 376.7 235 85.5
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.3e-102 376.7 233 85.0
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 1.3e-102 376.7 235 86.4
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.3e-102 376.7 235 86.4
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.7e-102 376.3 235 90.6
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 2.2e-102 375.9 235 84.3
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 2.9e-102 375.6 205 94.6
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 2.9e-102 375.6 235 84.7
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 2.9e-102 375.6 235 84.7
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.8e-102 375.2 235 85.1
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 3.8e-102 375.2 231 86.1
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 4.9e-102 374.8 235 85.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 6.4e-102 374.4 208 93.3
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 6.4e-102 374.4 235 85.5
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 8.4e-102 374.0 235 82.6
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 8.4e-102 374.0 235 83.0
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 8.4e-102 374.0 232 89.2
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 8.4e-102 374.0 229 86.9
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 8.4e-102 374.0 229 86.9
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.1e-101 373.6 208 93.8
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.4e-101 373.2 235 86.4
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.9e-101 372.9 235 84.7
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.9e-101 372.9 239 84.5
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.9e-101 372.9 235 84.3
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.9e-101 372.9 235 84.7
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.9e-101 372.9 235 83.8
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.9e-101 372.9 235 86.4
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.9e-101 372.9 231 85.7
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 2.4e-101 372.5 212 92.9
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 2.4e-101 372.5 235 84.7
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.4e-101 372.5 235 84.7
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 3.2e-101 372.1 235 86.4
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 4.2e-101 371.7 235 82.1
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.2e-101 371.7 235 84.3
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.4e-101 371.3 235 84.3
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 5.4e-101 371.3 235 86.8
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 7.1e-101 370.9 235 84.3
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 7.1e-101 370.9 206 92.7
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 7.1e-101 370.9 208 92.8
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 7.1e-101 370.9 235 85.5
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.3e-101 370.5 235 83.8
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.2e-100 370.2 235 84.3
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.2e-100 370.2 235 84.3
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.6e-100 369.8 204 94.6
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 2.1e-100 369.4 208 92.3
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.1e-100 369.4 208 92.8
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 2.7e-100 369.0 228 84.6
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 3.5e-100 368.6 235 85.5
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 3.5e-100 368.6 235 87.2
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 4.6e-100 368.2 235 83.8
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 4.6e-100 368.2 206 93.7
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.6e-100 368.2 262 77.1
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 6.0e-100 367.9 208 92.3
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 6.0e-100 367.9 208 92.3
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 6.0e-100 367.9 208 92.3
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 7.8e-100 367.5 208 91.8
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 2.3e-99 365.9 208 91.3
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.9e-99 365.2 235 82.6
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 1.1e-98 363.6 235 81.7
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.5e-98 363.2 208 88.9
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 5.6e-98 361.3 206 90.8
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.3e-97 360.1 235 80.0
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.3e-97 360.1 232 79.7
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 6.2e-97 357.8 232 82.3
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.8e-96 356.3 232 80.2
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.3e-94 350.1 230 79.6
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 2.2e-94 349.4 304 67.8
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.9e-93 346.3 235 79.1
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.3e-91 340.1 233 80.3
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 8.7e-91 337.4 192 91.1
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.2e-84 317.0 220 75.0
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 6.0e-84 314.7 205 79.0
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.9e-82 309.7 209 77.5
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 1.9e-77 293.1 185 86.5
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.2e-77 292.4 198 81.3
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 4.6e-76 288.5 196 84.7
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.0e-75 287.3 161 93.8
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 2.3e-75 286.2 204 75.0
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 8.7e-75 284.3 158 94.9
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.5e-74 283.5 158 94.3
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.9e-74 283.1 158 94.3
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 5.7e-74 281.6 155 95.5
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 3.1e-72 275.8 183 79.8
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 5.3e-72 275.0 194 85.1
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-69 266.5 186 75.8
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.6e-68 261.9 188 75.0
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 5.1e-67 258.5 165 83.6
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 7.7e-63 244.6 160 80.6
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.5e-55 218.8 124 91.9
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 6.1e-52 208.4 161 72.7
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.5e-45 185.3 110 90.9
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.7e-44 183.0 103 94.2
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 5.3e-40 168.7 94 94.7
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.5e-37 158.7 158 58.2
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.2e-34 151.0 88 92.0
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 4.2e-29 132.5 79 82.3
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 9.8e-26 121.3 206 38.8
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.0e-23 113.6 57 98.2
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 2.7e-23 113.2 81 74.1
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.7e-17 94.0 66 74.2
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 3.2e-16 89.7 69 68.1
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.6e-15 87.4 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 6.8e-11 72.0 46 78.3


User provided reference genes

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