Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04108 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 3.5e-49 198.0 100 100.0
Rhsim13G0201100 Rhododendron simsii HOM05D001813 ORTHO05D008124 6.5e-11 70.9 53 69.8
Nitab4.5_0002567g0070 Nicotiana tabacum HOM05D001813 ORTHO05D008124 7.1e-10 67.4 39 79.5
Nitab4.5_0009952g0030 Nicotiana tabacum HOM05D001813 ORTHO05D008124 7.1e-10 67.4 39 79.5
Phvul.L003537 Phaseolus vulgaris HOM05D001813 ORTHO05D008124 1.2e-09 66.6 53 64.2
Sabra04G0133000 Salix brachista HOM05D001813 ORTHO05D008124 1.6e-09 66.2 39 79.5
Potri.004G196200 Populus trichocarpa HOM05D001813 ORTHO05D008124 2.1e-09 65.9 39 76.9
TAR623G0200 Trochodendron aralioides HOM05D001813 ORTHO05D008124 3.5e-09 65.1 32 90.6
CSS0030952 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 6.0e-09 64.3 38 76.3
Dinv05236 Davidia involucrata HOM05D001813 ORTHO05D008124 6.0e-09 64.3 39 76.9
Glyma.20G053200 Glycine max HOM05D001813 ORTHO05D008124 7.9e-09 63.9 53 62.3
Solyc11g072010.3 Solanum lycopersicum HOM05D001813 ORTHO05D008124 7.9e-09 63.9 39 71.8
Sopen11g029670 Solanum pennellii HOM05D001813 ORTHO05D008124 7.9e-09 63.9 39 71.8
PGSC0003DMG400027401 Solanum tuberosum HOM05D001813 ORTHO05D008124 7.9e-09 63.9 39 71.8
Manes.04G055488 Manihot esculenta HOM05D001813 ORTHO05D008124 1.0e-08 63.5 39 74.4
PGR119G1182 Punica granatum HOM05D001813 ORTHO05D008124 1.0e-08 63.5 57 57.9
Gohir.A03G035300 Gossypium hirsutum HOM05D001813 ORTHO05D008124 1.3e-08 63.2 39 74.4
Gohir.D03G132900 Gossypium hirsutum HOM05D001813 ORTHO05D008124 1.3e-08 63.2 39 74.4
Gorai.003G140000 Gossypium raimondii HOM05D001813 ORTHO05D008124 1.3e-08 63.2 39 74.4
Nn7g37283 Nelumbo nucifera HOM05D001813 ORTHO05D008124 1.3e-08 63.2 32 84.4
CiPaw.13G120200 Carya illinoinensis HOM05D001813 ORTHO05D008124 1.8e-08 62.8 31 90.3
Haze_23659 Corylus avellana HOM05D001813 ORTHO05D008124 1.8e-08 62.8 31 90.3
TWI31G1397 Tripterygium wilfordii HOM05D001813 ORTHO05D008124 1.8e-08 62.8 39 71.8
Atru.chr3.2923 Acer truncatum HOM05D001813 ORTHO05D008124 2.3e-08 62.4 31 87.1
SHI04312 Sapria himalayana HOM05D001813 ORTHO05D008124 3.0e-08 62.0 32 84.4
Thecc.09G336900 Theobroma cacao HOM05D001813 ORTHO05D008124 3.0e-08 62.0 31 87.1
CsaV3_1G042050 Cucumis sativus L. HOM05D001813 ORTHO05D008124 3.9e-08 61.6 53 58.5
GSVIVG01037466001 Vitis vinifera HOM05D001813 ORTHO05D008124 3.9e-08 61.6 31 83.9
MD11G1179300 Malus domestica HOM05D001813 ORTHO05D008124 5.1e-08 61.2 31 87.1
Hund18828 Selenicereus undatus HOM05D001813 ORTHO05D008124 6.7e-08 60.8 32 81.2
Duzib168G1187 Durio zibethinus HOM05D001813 ORTHO05D008124 1.1e-07 60.1 54 57.4
ECA240G4767 Erigeron canadensis HOM05D001813 ORTHO05D008124 1.1e-07 60.1 32 78.1
CARHR191810 Cardamine hirsuta HOM05D001813 ORTHO05D008124 1.5e-07 59.7 39 69.2
AUR62020171 Chenopodium quinoa HOM05D001813 ORTHO05D008124 1.5e-07 59.7 30 86.7
Cc01_g07600 Coffea canephora HOM05D001813 ORTHO05D008124 1.5e-07 59.7 32 81.2
Thhalv10013841m.g Eutrema salsugineum HOM05D001813 ORTHO05D008124 1.5e-07 59.7 53 56.6
FvH4_3g27120 Fragaria vesca HOM05D001813 ORTHO05D008124 1.5e-07 59.7 58 53.4
FAN11G0469 Fragaria x ananassa HOM05D001813 ORTHO05D008124 1.5e-07 59.7 58 53.4
Sc06g0006200 Simmondsia chinensis HOM05D001813 ORTHO05D008124 1.5e-07 59.7 53 54.7
AT5G21060 Arabidopsis thaliana HOM05D001813 ORTHO05D008124 1.9e-07 59.3 74 45.9
Ca_16236_v3 Cicer arietinum L. HOM05D001813 ORTHO05D008124 1.9e-07 59.3 45 62.2
Sp6g23480 Schrenkiella parvula HOM05D001813 ORTHO05D008124 1.9e-07 59.3 39 71.8
MSTRG.17658 Avicennia marina HOM05D001813 ORTHO05D008124 2.5e-07 58.9 32 75.0
EL10Ac7g16223 Beta vulgaris HOM05D001813 ORTHO05D008124 2.5e-07 58.9 31 80.6
Lsat_1_v5_gn_6_79520 Lactuca sativa HOM05D001813 ORTHO05D008124 2.5e-07 58.9 32 75.0
AUR62001609 Chenopodium quinoa HOM05D001813 ORTHO05D008124 3.3e-07 58.5 30 83.3
HanXRQChr03g0084001 Helianthus annuus HOM05D001813 ORTHO05D008124 3.3e-07 58.5 30 80.0
CAN.G280.22 Capsicum annuum HOM05D001813 ORTHO05D008124 4.3e-07 58.2 39 69.2
Lj2A924G26 Lonicera japonica HOM05D001813 ORTHO05D008124 4.3e-07 58.2 39 66.7
Lj2C922G2 Lonicera japonica HOM05D001813 ORTHO05D008124 4.3e-07 58.2 39 66.7
Lalb_Chr02g0158501 Lupinus albus HOM05D001813 ORTHO05D008124 4.3e-07 58.2 32 78.1
Sed0003336 Sechium edule HOM05D001813 ORTHO05D008124 4.3e-07 58.2 32 78.1
Aa31LG1G13710 Aethionema arabicum HOM05D001813 ORTHO05D008124 5.7e-07 57.8 31 83.9
Ah.08g222780 Amaranthus hybridus HOM05D001813 ORTHO05D008124 5.7e-07 57.8 67 50.7
Carub.0006s1936 Capsella rubella HOM05D001813 ORTHO05D008124 5.7e-07 57.8 30 83.3
Actinidia07014 Actinidia chinensis HOM05D001813 ORTHO05D008124 7.4e-07 57.4 39 61.5
Prupe.5G009800 Prunus persica HOM05D001813 ORTHO05D008124 7.4e-07 57.4 31 83.9
HPP92_018006 Vanilla planifolia HOM05D001813 ORTHO05D008124 7.4e-07 57.4 30 80.0
BcaB08g36482 Brassica carinata HOM05D001813 ORTHO05D008124 9.6e-07 57.0 39 66.7
Cpa.g.sc103.70 Carica papaya HOM05D001813 ORTHO05D008124 9.6e-07 57.0 31 80.6
Eucgr.J00623 Eucalyptus grandis HOM05D001813 ORTHO05D008124 9.6e-07 57.0 39 66.7
SGA_v2.0_scaffold79G25520 Striga asiatica HOM05D001813 ORTHO05D008124 9.6e-07 57.0 32 75.0
THA.LOC104810965 Tarenaya hassleriana HOM05D001813 ORTHO05D008124 9.6e-07 57.0 30 80.0
TPR.G19398 Trifolium pratense HOM05D001813 ORTHO05D008124 9.6e-07 57.0 45 60.0
Lj6g0025568 Lotus japonicus HOM05D001813 ORTHO05D008124 1.3e-06 56.6 32 78.1
Psat5g109280 Pisum sativum HOM05D001813 ORTHO05D008124 1.6e-06 56.2 45 60.0
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea HOM05D001813 ORTHO05D008124 2.1e-06 55.8 32 75.0
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea HOM05D001813 ORTHO05D008124 2.1e-06 55.8 32 75.0
Ciclev10031821m.g Citrus clementina HOM05D001813 ORTHO05D008124 2.1e-06 55.8 30 80.0
Migut.N02415 Erythranthe guttata HOM05D001813 ORTHO05D008124 2.1e-06 55.8 57 49.1
FAN16G2170 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.1e-06 55.8 31 80.6
FAN25G0391 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.1e-06 55.8 31 80.6
RcHm_v2.0_Chr5g0049661 Rosa chinensis HOM05D001813 ORTHO05D008124 2.1e-06 55.8 31 80.6
AL6G32610 Arabidopsis lyrata HOM05D001813 ORTHO05D008124 2.8e-06 55.5 72 44.4
FAN21G3701 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.8e-06 55.5 58 51.7
SalBow3G4352 Salvia bowleyana HOM05D001813 ORTHO05D008124 2.8e-06 55.5 32 68.8
QL01p020357 Quercus lobata HOM05D001813 ORTHO05D008124 4.8e-06 54.7 31 77.4
unitig_699.g19161 Utricularia gibba HOM05D001813 ORTHO05D008124 4.8e-06 54.7 26 92.3
BcaC04g19501 Brassica carinata HOM05D001813 ORTHO05D008124 8.2e-06 53.9 53 52.8
C09p55020 Brassica napus HOM05D001813 ORTHO05D008124 8.2e-06 53.9 39 64.1
BolC9t58365H Brassica oleracea HOM05D001813 ORTHO05D008124 8.2e-06 53.9 39 64.1


User provided reference genes

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