Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 8.8e-59 230.3 138 100.0
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.3e-38 163.3 112 79.5
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 7.2e-29 131.0 109 67.9
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 3.6e-28 128.6 110 66.4
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 1.3e-25 120.2 117 60.7
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 3.5e-23 112.1 113 52.2
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.3e-22 109.4 119 54.6
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 2.9e-22 109.0 109 58.7
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 3.9e-22 108.6 110 58.2
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 5.0e-22 108.2 110 60.9
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 6.6e-22 107.8 105 69.5
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 1.1e-21 107.1 105 58.1
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.1e-21 107.1 110 58.2
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.5e-21 106.7 110 56.4
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 1.5e-21 106.7 105 56.2
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.5e-21 106.7 110 60.0
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.5e-21 106.7 110 60.0
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 2.5e-21 105.9 112 67.9
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 4.3e-21 105.1 115 53.0
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 4.3e-21 105.1 114 58.8
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 7.3e-21 104.4 105 57.1
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 7.3e-21 104.4 113 54.9
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.2e-20 103.6 111 67.6
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.2e-20 103.6 116 58.6
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.6e-20 103.2 112 55.4
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 2.1e-20 102.8 114 53.5
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 2.8e-20 102.4 106 53.8
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.8e-20 102.4 117 61.5
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.6e-20 102.1 117 52.1
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 3.6e-20 102.1 115 49.6
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 3.6e-20 102.1 117 52.1
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 3.6e-20 102.1 110 50.9
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 4.7e-20 101.7 117 53.0
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 4.7e-20 101.7 115 49.6
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 4.7e-20 101.7 115 49.6
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 8.0e-20 100.9 105 58.1
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 8.0e-20 100.9 116 56.0
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 8.0e-20 100.9 110 56.4
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 8.0e-20 100.9 120 52.5
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.4e-19 100.1 108 59.3
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 1.8e-19 99.8 124 58.1
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 2.3e-19 99.4 105 53.3
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 2.3e-19 99.4 105 53.3
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 2.3e-19 99.4 105 55.2
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 2.3e-19 99.4 105 55.2
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 2.3e-19 99.4 117 52.1
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 3.1e-19 99.0 109 51.4
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 6.8e-19 97.8 108 50.9
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 8.9e-19 97.4 113 51.3
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 2.6e-18 95.9 108 51.9
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 4.4e-18 95.1 110 48.2
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 5.8e-18 94.7 110 61.8
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 5.8e-18 94.7 117 52.1
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 7.5e-18 94.4 110 51.8
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 9.8e-18 94.0 110 49.1
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 9.8e-18 94.0 109 52.3
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.3e-17 93.6 105 52.4
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 1.3e-17 93.6 116 50.9
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.7e-17 93.2 105 58.1
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 1.7e-17 93.2 112 53.6
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 2.2e-17 92.8 105 52.4
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 2.2e-17 92.8 109 58.7
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 2.2e-17 92.8 88 58.0
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 2.2e-17 92.8 110 47.3
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 2.2e-17 92.8 116 49.1
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 2.9e-17 92.4 118 49.2
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.7e-17 92.0 113 58.4
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 3.7e-17 92.0 112 49.1
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 4.9e-17 91.7 105 66.7
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 4.9e-17 91.7 105 66.7
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 6.4e-17 91.3 106 48.1
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 8.3e-17 90.9 105 53.3
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.1e-16 90.5 108 47.2
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 1.4e-16 90.1 105 65.7
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 1.4e-16 90.1 105 65.7
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.2e-16 89.0 100 50.0
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.4e-16 88.2 116 51.7
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 7.0e-16 87.8 122 47.5
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 2.0e-15 86.3 113 54.9
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.0e-14 84.0 114 49.1
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.7e-14 83.2 117 44.4
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 1.7e-14 83.2 116 48.3
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 1.7e-14 83.2 113 47.8
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.0e-14 82.4 120 42.5
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 3.9e-14 82.0 114 47.4
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 6.6e-14 81.3 117 42.7
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 6.6e-14 81.3 121 52.9
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 1.1e-13 80.5 111 44.1
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.5e-13 80.1 116 41.4
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.9e-13 79.7 121 60.3
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 1.9e-13 79.7 105 48.6
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 3.3e-13 79.0 116 44.0
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 4.3e-13 78.6 114 43.9
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 5.6e-13 78.2 121 45.5
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 7.3e-13 77.8 121 45.5
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 9.5e-13 77.4 120 38.3
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 9.5e-13 77.4 110 46.4
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 9.5e-13 77.4 110 46.4
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 1.2e-12 77.0 116 45.7
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 2.8e-12 75.9 115 51.3
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.1e-11 73.9 114 50.0
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.8e-11 73.2 108 51.9
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 3.1e-11 72.4 113 50.4
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 8.9e-11 70.9 114 51.8
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 1.2e-10 70.5 111 42.3
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.5e-10 70.1 122 41.0
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 2.0e-10 69.7 111 41.4
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 3.4e-10 68.9 151 36.4
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.2e-09 66.2 79 46.8
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 3.7e-09 65.5 109 41.3
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 8.3e-09 64.3 106 48.1
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 1.4e-08 63.5 110 45.5
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 4.1e-08 62.0 122 43.4
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 4.1e-08 62.0 118 51.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.4e-08 61.6 116 44.0
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 2.1e-07 59.7 120 41.7
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 3.5e-07 58.9 117 40.2
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 4.6e-07 58.5 119 40.3
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 7.8e-07 57.8 109 36.7
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 7.8e-07 57.8 93 45.2
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 3.0e-06 55.8 114 43.9
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 3.0e-06 55.8 93 39.8
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 8.6e-06 54.3 109 35.8
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 8.6e-06 54.3 111 39.6


User provided reference genes

Program Settings