Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 6.4e-79 297.4 151 100.0
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 6.6e-68 260.8 154 88.3
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.5e-59 232.3 150 78.7
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.3e-57 224.6 148 75.0
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.2e-56 223.4 146 77.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.6e-56 222.2 151 74.2
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.8e-56 221.1 145 75.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 9.9e-56 220.3 144 76.4
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 9.9e-56 220.3 143 76.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 2.2e-55 219.2 149 71.8
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 2.9e-55 218.8 143 74.8
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 6.4e-55 217.6 141 75.2
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.4e-54 216.5 143 74.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.4e-54 216.5 143 74.8
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.9e-54 216.1 141 74.5
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.4e-54 215.7 146 71.2
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 5.5e-54 214.5 140 73.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.6e-53 213.0 151 70.9
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 7.9e-53 210.7 141 72.3
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 7.9e-53 210.7 149 69.8
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 7.9e-53 210.7 149 69.8
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.3e-52 209.9 151 68.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.3e-52 209.1 140 72.9
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 5.1e-52 208.0 146 71.2
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.5e-51 206.5 146 69.9
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.9e-51 206.1 143 71.3
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.3e-50 203.4 151 67.5
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.3e-50 203.4 146 68.5
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.6e-50 203.0 144 68.1
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.1e-50 202.6 144 68.8
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.1e-49 200.3 155 65.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.1e-49 200.3 143 70.6
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.8e-49 199.5 144 68.8
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.8e-49 199.5 140 70.0
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 2.4e-49 199.1 146 67.1
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.4e-49 199.1 149 68.5
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 6.9e-49 197.6 152 64.5
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 9.0e-49 197.2 151 64.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.6e-48 195.7 148 66.9
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 3.4e-48 195.3 143 67.1
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.4e-48 195.3 134 71.6
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.7e-47 193.0 143 65.7
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.2e-47 192.6 134 70.1
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.2e-47 192.6 146 67.1
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 4.9e-47 191.4 150 65.3
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 4.9e-47 191.4 143 65.7
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 4.9e-47 191.4 146 65.8
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 6.5e-47 191.0 146 65.8
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.9e-46 189.5 132 70.5
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 2.5e-46 189.1 148 62.8
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 2.5e-46 189.1 135 67.4
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 4.2e-46 188.3 138 67.4
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 5.5e-46 188.0 146 64.4
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 7.1e-46 187.6 138 66.7
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 7.1e-46 187.6 132 72.0
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.6e-45 186.4 143 64.3
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.6e-45 186.4 134 70.1
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.6e-45 186.4 134 70.1
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.6e-45 186.4 134 70.1
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.6e-45 186.4 147 61.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.1e-45 186.0 132 71.2
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 3.5e-45 185.3 144 64.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 4.6e-45 184.9 140 66.4
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 4.6e-45 184.9 140 66.4
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.6e-45 184.9 149 62.4
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.0e-45 184.5 136 65.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.0e-45 184.5 136 65.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 6.0e-45 184.5 147 63.3
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 6.0e-45 184.5 142 63.4
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 6.0e-45 184.5 148 62.8
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 7.9e-45 184.1 132 69.7
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.9e-45 184.1 134 67.2
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.3e-44 182.6 140 65.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 3.0e-44 182.2 137 65.0
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 3.0e-44 182.2 127 71.7
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 3.9e-44 181.8 127 71.7
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 3.9e-44 181.8 147 63.3
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 5.1e-44 181.4 120 75.8
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 6.7e-44 181.0 134 68.7
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 6.7e-44 181.0 155 60.6
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 6.7e-44 181.0 138 64.5
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.7e-44 180.6 132 68.9
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.5e-43 179.9 143 63.6
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.9e-43 179.5 131 68.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.5e-43 179.1 145 58.6
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 3.3e-43 178.7 133 63.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 3.3e-43 178.7 144 59.7
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.3e-43 178.3 132 68.2
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 4.3e-43 178.3 132 65.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 7.4e-43 177.6 133 66.2
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.3e-42 176.8 127 69.3
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.6e-42 176.4 146 60.3
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.7e-42 175.3 146 64.4
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.7e-42 175.3 146 64.4
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.7e-42 175.3 146 64.4
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 4.8e-42 174.9 138 62.3
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.4e-41 173.3 151 55.0
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.1e-41 172.2 220 47.3
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 4.1e-41 171.8 143 61.5
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.3e-41 171.4 143 60.8
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.2e-40 170.2 151 54.3
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 2.0e-40 169.5 133 65.4
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.7e-39 166.4 128 67.2
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 2.9e-39 165.6 128 63.3
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 5.0e-39 164.9 151 55.6
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 8.5e-39 164.1 130 61.5
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 3.2e-38 162.2 122 64.8
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 4.2e-38 161.8 143 56.6
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 7.2e-38 161.0 147 56.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.2e-37 160.2 132 59.8
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.1e-35 153.7 146 52.7
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 7.4e-35 151.0 121 61.2
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 4.8e-34 148.3 125 58.4
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.6e-32 142.5 135 54.1
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 6.5e-31 137.9 112 60.7
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 3.6e-29 132.1 130 52.3
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 5.1e-28 128.3 81 74.1
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 4.4e-27 125.2 86 69.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 7.4e-27 124.4 151 49.0
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.4e-25 120.2 81 74.1
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 3.1e-25 119.0 121 50.4
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 4.1e-25 118.6 121 50.4
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-24 116.7 121 49.6
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.9e-23 112.5 134 41.0
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 3.8e-23 112.1 133 42.1
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.1e-22 110.5 136 40.4
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 7.2e-22 107.8 162 38.3
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 9.4e-22 107.5 107 50.5
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 4.7e-21 105.1 137 39.4
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.3e-20 102.8 82 62.2
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.5e-19 100.1 79 63.3
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-19 99.0 95 51.6
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 6.3e-18 94.7 94 53.2
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 2.4e-17 92.8 91 54.9
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 7.7e-16 87.8 131 37.4
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 9.4e-14 80.9 109 39.4
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 2.7e-13 79.3 133 33.8
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.7e-13 78.6 61 65.6
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.0e-12 77.4 72 51.4
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.4e-12 77.0 133 33.8
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.8e-12 76.6 61 63.9
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.8e-12 76.6 132 36.4
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 2.6e-11 72.8 58 65.5
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 3.8e-07 58.9 103 35.9


User provided reference genes

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