Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 4.0e-87 324.7 162 100.0
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 1.5e-46 189.9 147 72.1
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 7.9e-35 151.0 140 57.9
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 3.7e-32 142.1 144 60.4
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.5e-25 120.2 143 51.7
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 1.7e-24 116.7 140 49.3
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 2.1e-19 99.8 129 47.3
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 7.5e-17 91.3 137 45.3
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 4.1e-15 85.5 82 56.1
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 5.4e-15 85.1 152 42.8
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 9.1e-15 84.3 124 42.7
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 9.1e-15 84.3 147 40.8
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 3.5e-14 82.4 147 40.8
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 5.9e-14 81.6 137 39.4
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 1.0e-13 80.9 134 39.6
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 1.0e-13 80.9 92 43.5
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 1.0e-13 80.9 123 41.5
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.3e-13 80.5 125 42.4
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.9e-13 79.3 149 40.3
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 5.0e-13 78.6 136 36.0
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 8.5e-13 77.8 69 60.9
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.1e-12 77.4 148 37.2
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 4.2e-12 75.5 138 36.2
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 9.5e-12 74.3 121 39.7
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 1.2e-11 73.9 74 56.8
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 3.6e-11 72.4 160 36.2
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 6.1e-11 71.6 126 38.9
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 1.0e-10 70.9 124 34.7
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 1.0e-10 70.9 122 41.0
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 1.0e-10 70.9 122 41.0
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 1.8e-10 70.1 134 38.1
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 1.8e-10 70.1 140 35.0
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 2.3e-10 69.7 134 37.3
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 3.0e-10 69.3 140 35.0
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 3.0e-10 69.3 86 45.3
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 4.0e-10 68.9 90 45.6
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 4.0e-10 68.9 142 40.1
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 5.2e-10 68.6 133 40.6
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 5.2e-10 68.6 130 39.2
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 6.8e-10 68.2 131 39.7
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 6.8e-10 68.2 125 43.2
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 1.5e-09 67.0 140 34.3
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 2.6e-09 66.2 130 43.8
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 3.4e-09 65.9 87 42.5
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 4.4e-09 65.5 141 34.8
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 4.4e-09 65.5 147 35.4
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 5.7e-09 65.1 67 52.2
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 5.7e-09 65.1 126 36.5
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 5.7e-09 65.1 126 36.5
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 5.7e-09 65.1 131 35.1
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 7.5e-09 64.7 127 37.8
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 7.5e-09 64.7 114 37.7
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 9.8e-09 64.3 146 35.6
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.3e-08 63.9 143 32.9
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 1.3e-08 63.9 77 49.4
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.7e-08 63.5 56 55.4
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 1.7e-08 63.5 56 53.6
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 2.2e-08 63.2 147 35.4
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 2.8e-08 62.8 60 51.7
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 3.7e-08 62.4 103 40.8
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 6.3e-08 61.6 133 36.1
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 1.1e-07 60.8 63 47.6
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 1.1e-07 60.8 61 47.5
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.1e-07 60.8 61 47.5
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 1.4e-07 60.5 126 36.5
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 1.8e-07 60.1 65 46.2
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 2.4e-07 59.7 102 39.2
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 2.4e-07 59.7 136 36.8
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 3.1e-07 59.3 147 32.7
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 4.1e-07 58.9 73 43.8
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 4.1e-07 58.9 127 34.6
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 5.4e-07 58.5 65 49.2
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 5.4e-07 58.5 41 65.9
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.4e-07 58.5 61 47.5
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.4e-07 58.5 61 47.5
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 7.0e-07 58.2 126 37.3
Oeu027210.1 Olea europaea HOM05D002956 ORTHO05D009000 1.2e-06 57.4 127 33.9
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 1.6e-06 57.0 84 42.9
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.0e-06 56.6 61 44.3
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 2.0e-06 56.6 79 45.6
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 3.5e-06 55.8 62 46.8
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 7.7e-06 54.7 62 46.8
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 7.7e-06 54.7 110 36.4


User provided reference genes

Program Settings