Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 8.2e-260 899.8 441 100.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.0e-217 760.0 441 86.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.9e-214 746.9 441 84.4
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.9e-214 746.9 441 84.4
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 9.2e-211 736.9 441 83.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 5.1e-209 731.1 441 82.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.1e-208 729.9 441 82.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 3.3e-208 728.4 441 82.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 5.6e-208 727.6 441 81.4
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 7.3e-208 727.2 441 81.2
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 9.5e-208 726.9 441 82.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 9.5e-208 726.9 441 81.9
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.2e-207 726.5 441 81.6
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.2e-207 726.5 441 81.6
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.2e-207 726.5 441 81.4
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.6e-207 726.1 441 81.6
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 3.6e-207 724.9 441 81.4
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 4.7e-207 724.5 441 81.4
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 8.1e-207 723.8 441 82.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 8.1e-207 723.8 440 81.6
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.4e-206 723.0 441 81.2
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.1e-206 721.8 441 81.6
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 3.1e-206 721.8 441 81.4
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.1e-206 721.8 441 81.4
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 4.0e-206 721.5 441 80.5
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.0e-206 721.5 441 81.2
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.5e-205 719.5 441 81.4
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.5e-205 719.5 441 80.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.0e-205 719.2 441 81.2
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 2.0e-205 719.2 441 80.7
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.6e-205 718.8 441 81.2
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.4e-205 718.4 441 80.3
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.4e-205 718.4 441 80.7
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.4e-205 718.4 441 80.7
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 4.4e-205 718.0 441 81.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 5.8e-205 717.6 441 80.5
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 5.8e-205 717.6 441 80.5
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 5.8e-205 717.6 441 80.0
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 7.6e-205 717.2 441 80.7
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 7.6e-205 717.2 441 80.5
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 9.9e-205 716.8 441 81.0
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 9.9e-205 716.8 441 80.5
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.3e-204 716.5 441 81.0
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.7e-204 716.1 441 80.7
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.2e-204 715.7 441 80.3
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 2.9e-204 715.3 441 80.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.9e-204 715.3 441 80.5
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 3.8e-204 714.9 441 80.5
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.8e-204 714.9 441 80.7
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.9e-204 714.5 441 80.3
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.4e-204 714.1 441 79.1
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 8.4e-204 713.8 441 79.1
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.4e-203 713.0 441 79.4
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.4e-203 713.0 441 80.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 1.4e-203 713.0 441 80.3
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.4e-203 713.0 441 80.7
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 3.2e-203 711.8 441 80.0
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 3.2e-203 711.8 441 80.5
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 4.2e-203 711.4 441 80.3
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.4e-203 711.1 441 78.9
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 9.2e-203 710.3 441 80.3
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 9.2e-203 710.3 441 80.0
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.6e-202 709.5 441 80.5
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-202 709.5 441 80.0
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.6e-202 709.5 441 80.0
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.6e-202 709.5 441 79.4
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 3.5e-202 708.4 441 80.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 4.6e-202 708.0 441 78.9
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 4.6e-202 708.0 441 79.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 7.8e-202 707.2 441 79.4
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.0e-201 706.8 441 79.1
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.0e-201 705.3 441 79.1
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 1.5e-200 703.0 441 79.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.9e-200 702.6 441 78.5
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.6e-200 701.0 441 79.4
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.8e-199 698.7 441 78.0
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 6.2e-199 697.6 441 78.7
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 6.2e-199 697.6 441 78.5
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.4e-198 696.4 441 78.2
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.1e-198 695.3 477 74.0
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.0e-198 694.9 441 78.2
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 5.3e-198 694.5 441 77.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 9.0e-198 693.7 441 77.8
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 4.4e-197 691.4 441 77.1
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 4.4e-197 691.4 441 77.8
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.7e-196 689.5 441 77.8
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 2.2e-196 689.1 441 77.6
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 8.4e-196 687.2 441 76.9
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.4e-195 685.6 441 76.4
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.4e-195 685.6 441 76.9
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.4e-195 685.6 441 76.9
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 3.2e-195 685.3 441 77.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 3.2e-195 685.3 441 77.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 3.2e-195 685.3 441 77.1
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 3.2e-195 685.3 441 76.0
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 4.2e-195 684.9 441 76.9
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 4.2e-195 684.9 441 76.9
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 4.2e-195 684.9 441 77.3
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 5.4e-195 684.5 441 76.4
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 7.1e-195 684.1 441 76.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 7.1e-195 684.1 441 76.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 7.1e-195 684.1 441 76.6
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 9.3e-195 683.7 441 76.6
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.2e-194 683.3 441 76.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.2e-194 683.3 441 76.4
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.2e-194 683.3 441 76.9
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.1e-194 682.6 441 76.2
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 2.1e-194 682.6 468 73.9
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 2.7e-194 682.2 441 76.4
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.5e-194 681.8 439 77.0
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 3.5e-194 681.8 435 77.2
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 3.5e-194 681.8 441 76.6
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.3e-193 679.9 440 76.4
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.3e-193 679.1 441 77.6
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 4.3e-192 674.9 458 75.5
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 5.6e-192 674.5 441 76.9
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 9.6e-192 673.7 441 74.8
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 5.3e-190 667.9 441 75.5
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 7.6e-189 664.1 441 76.0
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.2e-187 658.7 441 74.8
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.4e-182 643.3 396 80.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 5.3e-182 641.3 414 76.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.3e-180 636.7 441 71.9
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 9.3e-179 630.6 441 71.0
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 4.6e-178 628.2 400 79.5
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 7.9e-178 627.5 441 70.7
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.0e-177 625.5 441 69.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 3.7e-175 618.6 399 75.9
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 8.7e-169 597.4 441 69.4
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 6.3e-167 591.3 440 66.4
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.4e-166 590.1 379 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 3.8e-164 582.0 441 63.9
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.4e-163 580.1 373 78.0
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.7e-162 575.9 441 63.7
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.0e-160 569.7 441 66.9
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 6.3e-159 564.7 441 63.0
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.4e-158 562.8 442 62.7
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-157 560.1 442 62.0
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.7e-154 549.3 440 61.4
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.8e-153 546.6 441 61.9
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.1e-147 527.3 296 87.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.2e-147 524.6 442 59.5
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 4.8e-135 485.3 441 59.9
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 5.9e-133 478.4 442 59.3
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 3.2e-131 472.6 441 57.6
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.6e-117 427.2 298 72.5
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 9.8e-112 407.9 436 48.9
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.0e-104 383.6 434 47.5
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.1e-102 375.9 315 63.2
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.3e-100 370.2 244 76.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-97 361.3 234 76.9
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.3e-97 360.1 234 75.6
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 4.0e-97 359.4 234 76.1
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 9.9e-80 301.6 188 78.7
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.7e-76 290.8 339 46.9
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.3e-75 286.6 184 78.3
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.8e-52 211.1 116 86.2
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.4e-33 147.5 101 69.3
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.4e-25 120.9 390 26.7
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.2e-23 114.4 390 24.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 6.3e-18 96.3 47 95.7
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 7.2e-14 82.8 45 80.0
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.8e-12 78.2 71 57.7
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 8.6e-07 59.3 294 23.5


User provided reference genes

Program Settings