Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.5e-39 164.5 82 100.0
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 6.4e-33 143.7 81 86.4
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.1e-11 73.2 45 82.2
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 1.1e-11 73.2 67 56.7
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.2e-10 69.7 40 75.0
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 3.4e-10 68.2 40 80.0
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 3.4e-10 68.2 40 80.0
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 4.5e-10 67.8 36 80.6
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 5.8e-10 67.4 41 80.5
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 1.0e-09 66.6 59 59.3
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.3e-09 66.2 36 86.1
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.7e-09 65.9 38 73.7
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 2.2e-09 65.5 40 80.0
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 2.2e-09 65.5 39 74.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.8e-09 64.7 65 55.4
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 5.0e-09 64.3 35 82.9
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 6.5e-09 63.9 34 85.3
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 8.4e-09 63.5 44 65.9
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 8.4e-09 63.5 36 80.6
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.1e-08 63.2 33 87.9
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.1e-08 63.2 34 82.4
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 1.4e-08 62.8 41 68.3
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 1.4e-08 62.8 34 85.3
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.9e-08 62.4 36 77.8
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 1.9e-08 62.4 39 71.8
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 2.5e-08 62.0 49 63.3
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 2.5e-08 62.0 31 90.3
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 2.5e-08 62.0 31 90.3
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 2.5e-08 62.0 31 90.3
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 2.5e-08 62.0 58 55.2
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 3.2e-08 61.6 51 62.7
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 3.2e-08 61.6 36 77.8
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 5.5e-08 60.8 35 71.4
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 5.5e-08 60.8 33 84.8
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 5.5e-08 60.8 34 82.4
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 5.5e-08 60.8 35 71.4
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 5.5e-08 60.8 35 71.4
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 5.5e-08 60.8 31 87.1
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 5.5e-08 60.8 37 70.3
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 7.1e-08 60.5 34 82.4
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 7.1e-08 60.5 31 87.1
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 7.1e-08 60.5 31 87.1
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 7.1e-08 60.5 31 87.1
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 7.1e-08 60.5 34 82.4
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 7.1e-08 60.5 34 82.4
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 9.3e-08 60.1 34 76.5
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 9.3e-08 60.1 34 82.4
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 9.3e-08 60.1 34 82.4
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 9.3e-08 60.1 34 82.4
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 9.3e-08 60.1 34 82.4
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 9.3e-08 60.1 33 78.8
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 9.3e-08 60.1 34 82.4
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 1.2e-07 59.7 33 81.8
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.2e-07 59.7 31 87.1
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 1.2e-07 59.7 34 79.4
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 1.2e-07 59.7 34 76.5
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.2e-07 59.7 34 76.5
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 1.6e-07 59.3 31 83.9
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.6e-07 59.3 50 62.0
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.6e-07 59.3 32 81.2
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.6e-07 59.3 32 81.2
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.6e-07 59.3 32 81.2
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 1.6e-07 59.3 34 79.4
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 2.1e-07 58.9 49 63.3
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.1e-07 58.9 32 81.2
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.1e-07 58.9 33 81.8
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 2.1e-07 58.9 34 76.5
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 2.1e-07 58.9 34 76.5
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 2.1e-07 58.9 34 76.5
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.7e-07 58.5 52 57.7
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 3.5e-07 58.2 52 57.7
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 3.5e-07 58.2 31 83.9
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 3.5e-07 58.2 35 68.6
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 3.5e-07 58.2 33 75.8
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 4.6e-07 57.8 30 83.3
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 4.6e-07 57.8 50 60.0
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 4.6e-07 57.8 34 76.5
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 4.6e-07 57.8 34 76.5
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 6.1e-07 57.4 31 77.4
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 6.1e-07 57.4 31 77.4
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 6.1e-07 57.4 34 73.5
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 6.1e-07 57.4 32 78.1
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 1.0e-06 56.6 31 77.4
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.0e-06 56.6 31 77.4
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 1.3e-06 56.2 36 66.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 2.3e-06 55.5 31 74.2
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 3.0e-06 55.1 38 65.8
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 8.7e-06 53.5 33 63.6


User provided reference genes

Program Settings