Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03837 Vaccinium macrocarpon HOM05D002808 ORTHO05D003135 9.4e-161 570.1 279 100.0
RhsimUnG0043100 Rhododendron simsii HOM05D002808 ORTHO05D003135 2.9e-117 425.6 307 71.0
Actinidia01909 Actinidia chinensis HOM05D002808 ORTHO05D003135 1.0e-85 320.9 318 56.9
CSS0000867 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 6.9e-79 298.1 324 50.9
Dinv07522 Davidia involucrata HOM05D002808 ORTHO05D003135 1.7e-69 266.9 327 47.4
SGA_v2.0_scaffold22G09764 Striga asiatica HOM05D002808 ORTHO05D003135 6.5e-45 185.3 302 41.1
MSTRG.7317 Avicennia marina HOM05D002808 ORTHO05D003135 5.5e-44 182.2 347 37.5
Sopen02g023520 Solanum pennellii HOM05D002808 ORTHO05D003135 1.4e-42 177.6 299 38.1
Solyc02g078660.4 Solanum lycopersicum HOM05D002808 ORTHO05D003135 1.8e-42 177.2 299 38.1
Cc02_g12840 Coffea canephora HOM05D002808 ORTHO05D003135 8.8e-42 174.9 283 38.5
Peaxi162Scf00031g00821 Petunia axillaris HOM05D002808 ORTHO05D003135 4.4e-41 172.6 300 36.3
Oeu038236.1 Olea europaea HOM05D002808 ORTHO05D003135 7.5e-41 171.8 300 37.3
Cc09_g10780 Coffea canephora HOM05D002808 ORTHO05D003135 1.3e-40 171.0 294 37.4
Lj1A1209T61 Lonicera japonica HOM05D002808 ORTHO05D003135 3.1e-39 166.4 382 34.3
Peaxi162Scf00748g00011 Petunia axillaris HOM05D002808 ORTHO05D003135 3.1e-39 166.4 317 36.6
Thecc.06G193100 Theobroma cacao HOM05D002808 ORTHO05D003135 5.4e-39 165.6 306 34.0
TAR627G0014 Trochodendron aralioides HOM05D002808 ORTHO05D003135 5.4e-39 165.6 306 35.9
CAN.G1705.3 Capsicum annuum HOM05D002808 ORTHO05D003135 7.0e-39 165.2 272 39.3
PGSC0003DMG400022806 Solanum tuberosum HOM05D002808 ORTHO05D003135 2.5e-36 156.8 234 40.6
Solyc10g009140.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 5.6e-36 155.6 273 36.3
Sopen10g004920 Solanum pennellii HOM05D002808 ORTHO05D003135 1.0e-34 151.4 285 35.4
Peaxi162Scf01021g00005 Petunia axillaris HOM05D002808 ORTHO05D003135 1.4e-34 151.0 309 33.3
GSVIVG01007118001 Vitis vinifera HOM05D002808 ORTHO05D003135 1.8e-34 150.6 247 38.1
SalBow8G4287 Salvia bowleyana HOM05D002808 ORTHO05D003135 2.3e-34 150.2 316 34.5
SalBow8G5370 Salvia bowleyana HOM05D002808 ORTHO05D003135 2.3e-34 150.2 316 34.5
PSO675G4664 Papaver somniferum HOM05D002808 ORTHO05D003135 4.0e-34 149.4 268 36.9
Duzib192G0379 Durio zibethinus HOM05D002808 ORTHO05D003135 5.2e-34 149.1 309 31.7
DCAR_028116 Daucus carota HOM05D002808 ORTHO05D003135 1.2e-33 147.9 286 35.0
PSO541G4209 Papaver somniferum HOM05D002808 ORTHO05D003135 1.2e-33 147.9 268 36.9
Lalb_Chr05g0218311 Lupinus albus HOM05D002808 ORTHO05D003135 2.0e-33 147.1 293 34.5
Duzib235G0556 Durio zibethinus HOM05D002808 ORTHO05D003135 3.4e-33 146.4 226 36.7
Dinv40529 Davidia involucrata HOM05D002808 ORTHO05D003135 9.8e-33 144.8 220 44.1
CiPaw.09G054500 Carya illinoinensis HOM05D002808 ORTHO05D003135 1.7e-32 144.1 299 32.1
CAN.G289.35 Capsicum annuum HOM05D002808 ORTHO05D003135 2.4e-31 140.2 259 35.5
Potri.011G047100 Populus trichocarpa HOM05D002808 ORTHO05D003135 2.4e-31 140.2 259 34.4
Aqoxy1G02592 Aquilegia oxysepala HOM05D002808 ORTHO05D003135 7.0e-31 138.7 308 32.1
PGSC0003DMG400026858 Solanum tuberosum HOM05D002808 ORTHO05D003135 1.2e-30 137.9 294 32.0
Sabra11G0032700 Salix brachista HOM05D002808 ORTHO05D003135 1.6e-30 137.5 223 36.3
TAR626G1215 Trochodendron aralioides HOM05D002808 ORTHO05D003135 2.7e-30 136.7 249 34.9
Nitab4.5_0006098g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 4.6e-30 136.0 257 34.6
Nitab4.5_0009790g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 4.6e-30 136.0 319 33.2
TAR626G1282 Trochodendron aralioides HOM05D002808 ORTHO05D003135 4.6e-30 136.0 249 35.3
Glyma.13G183300 Glycine max HOM05D002808 ORTHO05D003135 1.7e-29 134.0 267 33.0
Solyc03g006530.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 3.9e-29 132.9 301 30.9
QL05p038939 Quercus lobata HOM05D002808 ORTHO05D003135 1.1e-28 131.3 270 33.0
CiPaw.03G174400 Carya illinoinensis HOM05D002808 ORTHO05D003135 1.5e-28 131.0 249 34.9
Glyma.07G193100 Glycine max HOM05D002808 ORTHO05D003135 1.5e-28 131.0 312 31.4
Potri.004G038400 Populus trichocarpa HOM05D002808 ORTHO05D003135 1.5e-28 131.0 287 31.0
Manes.17G042200 Manihot esculenta HOM05D002808 ORTHO05D003135 5.6e-28 129.0 269 32.3
ClCG03G005720 Citrullus lanatus HOM05D002808 ORTHO05D003135 9.5e-28 128.3 203 38.4
Phvul.006G188600 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 9.5e-28 128.3 286 32.2
Lalb_Chr09g0327531 Lupinus albus HOM05D002808 ORTHO05D003135 1.2e-27 127.9 312 30.8
Sopen03g002530 Solanum pennellii HOM05D002808 ORTHO05D003135 1.2e-27 127.9 298 30.5
Gorai.011G025400 Gossypium raimondii HOM05D002808 ORTHO05D003135 1.6e-27 127.5 283 31.1
Sabra04G0023500 Salix brachista HOM05D002808 ORTHO05D003135 6.2e-27 125.6 274 30.7
TWI38G0056 Tripterygium wilfordii HOM05D002808 ORTHO05D003135 6.2e-27 125.6 280 30.0
Nitab4.5_0003341g0020 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.1e-26 124.8 271 35.4
MD05G1320900 Malus domestica HOM05D002808 ORTHO05D003135 1.4e-26 124.4 271 31.0
Ca_18516_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 2.3e-26 123.6 269 33.1
COL.COLO4_22781 Corchorus olitorius HOM05D002808 ORTHO05D003135 2.3e-26 123.6 233 32.2
Haze_06527 Corylus avellana HOM05D002808 ORTHO05D003135 8.9e-26 121.7 295 29.8
CsaV3_1G011990 Cucumis sativus L. HOM05D002808 ORTHO05D003135 8.9e-26 121.7 203 37.9
PGR004G0378 Punica granatum HOM05D002808 ORTHO05D003135 8.9e-26 121.7 243 32.1
Cpa.g.sc530.4 Carica papaya HOM05D002808 ORTHO05D003135 2.0e-25 120.6 189 37.0
Haze_13133 Corylus avellana HOM05D002808 ORTHO05D003135 2.0e-25 120.6 266 32.3
Medtr4g089110 Medicago truncatula HOM05D002808 ORTHO05D003135 2.0e-25 120.6 332 29.8
Phvul.002G225500 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 2.6e-25 120.2 305 31.8
Gohir.A06G125900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 4.4e-25 119.4 274 30.7
Nitab4.5_0001820g0170 Nicotiana tabacum HOM05D002808 ORTHO05D003135 4.4e-25 119.4 138 46.4
VMungo0540G0036 Vigna mungo HOM05D002808 ORTHO05D003135 9.8e-25 118.2 255 31.4
Gohir.D06G129900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.7e-24 117.5 274 30.3
Gorai.010G151600 Gossypium raimondii HOM05D002808 ORTHO05D003135 2.2e-24 117.1 274 29.9
Lj6g0001777 Lotus japonicus HOM05D002808 ORTHO05D003135 2.9e-24 116.7 303 30.0
Manes.13G148600 Manihot esculenta HOM05D002808 ORTHO05D003135 3.7e-24 116.3 246 32.1
Atru.chr10.1958 Acer truncatum HOM05D002808 ORTHO05D003135 4.9e-24 115.9 249 31.7
Migut.M01173 Erythranthe guttata HOM05D002808 ORTHO05D003135 4.9e-24 115.9 267 31.5
MELO3C002575.2 Cucumis melo HOM05D002808 ORTHO05D003135 1.1e-23 114.8 202 37.1
Psat1g206480 Pisum sativum HOM05D002808 ORTHO05D003135 1.1e-23 114.8 274 33.9
Glyma.13G242700 Glycine max HOM05D002808 ORTHO05D003135 1.4e-23 114.4 290 29.7
Lj4g0010618 Lotus japonicus HOM05D002808 ORTHO05D003135 1.4e-23 114.4 268 31.3
arahy.Tifrunner.gnm1.ann1.KT8XA7 Arachis hypogaea HOM05D002808 ORTHO05D003135 2.4e-23 113.6 298 32.6
VMungo0251G2678 Vigna mungo HOM05D002808 ORTHO05D003135 2.4e-23 113.6 305 30.8
MD05G1320700 Malus domestica HOM05D002808 ORTHO05D003135 3.2e-23 113.2 282 29.1
Medtr2g013000 Medicago truncatula HOM05D002808 ORTHO05D003135 3.2e-23 113.2 255 32.9
QL08p038142 Quercus lobata HOM05D002808 ORTHO05D003135 7.0e-23 112.1 276 30.1
arahy.Tifrunner.gnm1.ann1.29L0YD Arachis hypogaea HOM05D002808 ORTHO05D003135 1.2e-22 111.3 304 31.9
Ca_00303_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 2.0e-22 110.5 228 33.3
Thhalv10023269m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 7.8e-22 108.6 275 30.2
Gohir.D09G071400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.0e-21 108.2 265 32.8
MD05G1320400 Malus domestica HOM05D002808 ORTHO05D003135 1.0e-21 108.2 219 30.6
HanXRQChr04g0124011 Helianthus annuus HOM05D002808 ORTHO05D003135 3.0e-21 106.7 156 38.5
Sc17g0006360 Simmondsia chinensis HOM05D002808 ORTHO05D003135 3.0e-21 106.7 293 29.7
THA.LOC104809567 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 3.0e-21 106.7 288 28.1
BcaC04g22302 Brassica carinata HOM05D002808 ORTHO05D003135 3.9e-21 106.3 288 29.5
C09p20960 Brassica napus HOM05D002808 ORTHO05D003135 3.9e-21 106.3 288 29.5
BolC9t54993H Brassica oleracea HOM05D002808 ORTHO05D003135 3.9e-21 106.3 288 29.5
BcaB04g20313 Brassica carinata HOM05D002808 ORTHO05D003135 8.6e-21 105.1 275 29.1
BcaB07g31258 Brassica carinata HOM05D002808 ORTHO05D003135 8.6e-21 105.1 270 28.9
CARHR052240 Cardamine hirsuta HOM05D002808 ORTHO05D003135 8.6e-21 105.1 296 29.7
Ciclev10017687m.g Citrus clementina HOM05D002808 ORTHO05D003135 8.6e-21 105.1 238 29.4
Sp2g03440 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.1e-20 104.8 277 30.3
Cfa014582 Carpinus fangiana HOM05D002808 ORTHO05D003135 1.5e-20 104.4 157 40.1
Sed0028146 Sechium edule HOM05D002808 ORTHO05D003135 1.5e-20 104.4 156 38.5
ATR0693G055 Amborella trichopoda HOM05D002808 ORTHO05D003135 2.5e-20 103.6 249 31.3
Dinv12909 Davidia involucrata HOM05D000973 ORTHO05D000652 2.5e-20 103.6 262 31.7
Psat7g111840 Pisum sativum HOM05D002808 ORTHO05D003135 2.5e-20 103.6 331 27.2
Lsat_1_v5_gn_7_19381 Lactuca sativa HOM05D002808 ORTHO05D003135 3.3e-20 103.2 164 35.4
Rhsim04G0067100 Rhododendron simsii HOM05D002808 ORTHO05D003135 3.3e-20 103.2 262 31.7
CANSAT64G0853 Cannabis sativa HOM05D002808 ORTHO05D003135 5.6e-20 102.4 168 38.1
BraA09t37329Z Brassica rapa HOM05D002808 ORTHO05D003135 7.3e-20 102.1 270 28.9
arahy.Tifrunner.gnm1.ann1.2NE36Q Arachis hypogaea HOM05D002808 ORTHO05D003135 1.2e-19 101.3 240 28.8
Nn1g06645 Nelumbo nucifera HOM05D002808 ORTHO05D003135 1.2e-19 101.3 288 28.5
GSVIVG01030542001 Vitis vinifera HOM05D002808 ORTHO05D003135 1.2e-19 101.3 183 31.7
Thhalv10009997m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.6e-19 100.9 281 27.8
ECA236G2337 Erigeron canadensis HOM05D002808 ORTHO05D003135 2.1e-19 100.5 136 38.2
TPR.G36820 Trifolium pratense HOM05D002808 ORTHO05D003135 2.1e-19 100.5 290 29.0
arahy.Tifrunner.gnm1.ann1.V35IN5 Arachis hypogaea HOM05D002808 ORTHO05D003135 3.6e-19 99.8 267 28.5
BcaC09g49337 Brassica carinata HOM05D002808 ORTHO05D003135 1.1e-18 98.2 148 37.2
C01p37760 Brassica napus HOM05D002808 ORTHO05D003135 1.1e-18 98.2 148 37.2
TPR.G12045 Trifolium pratense HOM05D002808 ORTHO05D003135 1.1e-18 98.2 255 29.8
A01p29880 Brassica napus HOM05D002808 ORTHO05D003135 1.4e-18 97.8 148 37.8
Nn2g14250 Nelumbo nucifera HOM05D002808 ORTHO05D003135 1.8e-18 97.4 195 35.4
AL2G15350 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 3.1e-18 96.7 297 27.6
Cc03_g09780 Coffea canephora HOM05D002808 ORTHO05D003135 4.0e-18 96.3 206 34.0
Carub.0002s0411 Capsella rubella HOM05D002808 ORTHO05D003135 5.2e-18 95.9 148 35.8
MD10G1299500 Malus domestica HOM05D002808 ORTHO05D003135 2.6e-17 93.6 270 28.5
Aa31LG2G9520 Aethionema arabicum HOM05D002808 ORTHO05D003135 3.4e-17 93.2 246 29.7
AL1G22050 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 4.4e-17 92.8 242 28.5
PGR042G1039 Punica granatum HOM05D002808 ORTHO05D003135 4.4e-17 92.8 160 34.4
Sed0005619 Sechium edule HOM05D002808 ORTHO05D003135 4.4e-17 92.8 169 33.7
AT1G11070 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 9.9e-17 91.7 246 28.0
BolC1t03738H Brassica oleracea HOM05D002808 ORTHO05D003135 1.3e-16 91.3 155 35.5
Cc05_g06820 Coffea canephora HOM05D002808 ORTHO05D003135 1.3e-16 91.3 155 34.8
AT1G61080 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 1.7e-16 90.9 148 34.5
BraA01t03116Z Brassica rapa HOM05D002808 ORTHO05D003135 1.7e-16 90.9 155 36.1
AUR62016958 Chenopodium quinoa HOM05D002808 ORTHO05D003135 2.9e-16 90.1 236 29.2
Sp1g09760 Schrenkiella parvula HOM05D002808 ORTHO05D003135 3.7e-16 89.7 245 27.8
EL10Ac8g20311 Beta vulgaris HOM05D002808 ORTHO05D003135 4.9e-16 89.4 208 29.3
AUR62014773 Chenopodium quinoa HOM05D002808 ORTHO05D003135 6.4e-16 89.0 189 32.3
Aa31LG9G9460 Aethionema arabicum HOM05D002808 ORTHO05D003135 1.1e-15 88.2 160 33.1
A09p16920 Brassica napus HOM05D002808 ORTHO05D003135 2.4e-15 87.0 161 33.5
BraA06t23978Z Brassica rapa HOM05D002808 ORTHO05D003135 2.4e-15 87.0 271 28.0
Nn2g12560 Nelumbo nucifera HOM05D002808 ORTHO05D003135 2.4e-15 87.0 146 35.6
THA.LOC104812819 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 3.2e-15 86.7 266 25.2
A06p07770 Brassica napus HOM05D002808 ORTHO05D003135 5.4e-15 85.9 271 27.7
CARHR011260 Cardamine hirsuta HOM05D002808 ORTHO05D003135 9.2e-15 85.1 149 32.9
Thhalv10029342m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.2e-14 84.7 175 30.9
AL6G48560 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 1.6e-14 84.3 148 34.5
BcaC04g21359 Brassica carinata HOM05D002808 ORTHO05D003135 2.1e-14 84.0 274 25.2
C09p32730 Brassica napus HOM05D002808 ORTHO05D003135 2.1e-14 84.0 274 25.2
Carub.0006s3294 Capsella rubella HOM05D002808 ORTHO05D003135 2.7e-14 83.6 148 34.5
BolC5t29676H Brassica oleracea HOM05D002808 ORTHO05D003135 3.5e-14 83.2 226 29.6
BolC9t56117H Brassica oleracea HOM05D002808 ORTHO05D003135 3.5e-14 83.2 269 25.3
Lj8A114G40 Lonicera japonica HOM05D002808 ORTHO05D003135 3.5e-14 83.2 108 37.0
Hund21253 Selenicereus undatus HOM05D002808 ORTHO05D003135 3.5e-14 83.2 278 27.3
Sp6g03960 Schrenkiella parvula HOM05D002808 ORTHO05D003135 7.8e-14 82.0 136 34.6
A09p25850 Brassica napus HOM05D002808 ORTHO05D003135 1.0e-13 81.6 161 31.1
BraA09t38155Z Brassica rapa HOM05D002808 ORTHO05D003135 1.0e-13 81.6 161 31.1
AT4G04980 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 1.3e-13 81.3 136 33.8
BcaB01g01857 Brassica carinata HOM05D002808 ORTHO05D003135 2.3e-13 80.5 161 30.4
Glyma.15G070800 Glycine max HOM05D002808 ORTHO05D003135 5.1e-13 79.3 251 26.7
C05p09360 Brassica napus HOM05D002808 ORTHO05D003135 8.6e-13 78.6 217 29.0
Nitab4.5_0002066g0070 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.1e-12 78.2 64 51.6
CARHR252540 Cardamine hirsuta HOM05D002808 ORTHO05D003135 3.3e-12 76.6 138 32.6
SHI01937 Sapria himalayana HOM05D002808 ORTHO05D003135 4.3e-12 76.3 109 36.7
Aa31LG1G3840 Aethionema arabicum HOM05D002808 ORTHO05D003135 1.6e-11 74.3 153 30.1
CSS0014200 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 2.1e-11 73.9 134 32.8
BcaC07g41790 Brassica carinata HOM05D002808 ORTHO05D003135 3.6e-11 73.2 159 30.8
Ah.09g235810 Amaranthus hybridus HOM05D002808 ORTHO05D003135 8.1e-11 72.0 338 23.7
C08p48350 Brassica napus HOM05D002808 ORTHO05D003135 4.0e-10 69.7 156 27.6
BolC8t52374H Brassica oleracea HOM05D002808 ORTHO05D003135 4.0e-10 69.7 156 27.6
A09p64840 Brassica napus HOM05D002808 ORTHO05D003135 6.8e-10 68.9 104 33.7
BraA09t41811Z Brassica rapa HOM05D002808 ORTHO05D003135 6.8e-10 68.9 104 33.7
CAN.G1398.10 Capsicum annuum HOM05D002808 ORTHO05D003135 2.2e-08 63.9 113 37.2
Nitab4.5_0001820g0140 Nicotiana tabacum HOM05D002808 ORTHO05D003135 8.4e-08 62.0 78 46.2
HPP92_016702 Vanilla planifolia HOM05D002808 ORTHO05D003135 8.4e-08 62.0 197 25.9
Gohir.D10G024200 Gossypium hirsutum HOM05D002808 ORTHO05D003135 2.1e-06 57.4 171 27.5
SEGI_22605 Sequoiadendron giganteum HOM05D002808 ORTHO05D003135 2.1e-06 57.4 125 26.4
Gohir.A10G023400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 7.8e-06 55.5 135 29.6


User provided reference genes

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