Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 6.7e-166 587.4 327 100.0
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 7.8e-90 334.7 327 62.7
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.2e-84 316.6 327 60.2
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 5.4e-75 285.4 327 56.0
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 2.4e-70 270.0 328 53.7
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 8.4e-68 261.5 327 50.5
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 1.4e-67 260.8 327 50.8
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 3.2e-67 259.6 328 50.6
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.3e-65 254.2 330 51.2
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.1e-65 252.3 327 49.2
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.7e-64 248.8 327 48.6
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 7.4e-64 248.4 327 49.5
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.6e-63 247.3 327 48.9
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 2.8e-63 246.5 326 48.8
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.1e-62 244.6 330 48.2
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.1e-62 243.0 327 50.2
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.1e-62 243.0 327 50.2
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 7.6e-61 238.4 327 48.3
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 1.0e-60 238.0 327 48.3
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 1.0e-60 238.0 331 48.3
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 2.2e-60 236.9 328 49.1
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 5.0e-60 235.7 327 48.0
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.0e-60 235.7 327 47.7
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 6.5e-60 235.3 328 47.3
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 8.4e-60 235.0 327 51.1
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 1.1e-59 234.6 327 48.6
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 1.4e-59 234.2 327 46.8
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 2.5e-59 233.4 355 44.5
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.5e-59 233.4 327 46.5
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 4.2e-59 232.6 327 46.5
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 4.2e-59 232.6 327 46.5
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.5e-59 232.3 327 46.5
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.5e-59 232.3 327 46.5
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 5.5e-59 232.3 327 47.4
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 7.1e-59 231.9 327 46.2
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 7.1e-59 231.9 327 46.2
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 9.3e-59 231.5 327 46.5
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 1.2e-58 231.1 391 42.5
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 1.6e-58 230.7 329 47.4
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.6e-58 230.7 322 51.2
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.6e-58 230.7 327 48.0
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 2.1e-58 230.3 336 45.8
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 2.7e-58 229.9 327 46.8
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 3.5e-58 229.6 327 46.8
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.0e-57 228.0 327 49.8
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.8e-57 227.3 331 45.6
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.8e-57 227.3 327 46.5
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 2.3e-57 226.9 327 46.2
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 2.3e-57 226.9 329 46.2
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 3.0e-57 226.5 329 46.2
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 3.0e-57 226.5 329 46.2
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 3.9e-57 226.1 329 46.2
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 3.9e-57 226.1 327 46.2
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 3.9e-57 226.1 327 46.8
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 2.5e-56 223.4 327 45.9
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 4.3e-56 222.6 327 46.5
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 4.3e-56 222.6 330 46.7
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 4.3e-56 222.6 327 45.9
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 5.7e-56 222.2 328 44.5
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 5.7e-56 222.2 327 45.6
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 7.4e-56 221.9 328 46.0
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 9.7e-56 221.5 326 44.8
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 9.7e-56 221.5 329 45.6
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.3e-55 221.1 327 45.3
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.3e-55 221.1 327 45.0
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 2.2e-55 220.3 327 45.6
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 3.7e-55 219.5 328 45.7
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 3.7e-55 219.5 327 43.7
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 3.7e-55 219.5 327 43.7
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 3.7e-55 219.5 328 46.6
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 3.7e-55 219.5 322 47.8
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 4.8e-55 219.2 327 45.0
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 4.8e-55 219.2 327 45.9
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 6.3e-55 218.8 327 43.7
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 1.1e-54 218.0 331 44.7
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 1.4e-54 217.6 330 49.7
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 1.8e-54 217.2 327 44.0
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.4e-54 216.9 336 49.1
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 9.0e-54 214.9 325 45.5
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 9.0e-54 214.9 327 45.9
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.2e-53 214.5 328 45.1
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 2.0e-53 213.8 328 45.4
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.6e-53 213.4 301 50.5
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.6e-53 213.4 327 43.7
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 4.5e-53 212.6 327 47.1
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 5.9e-53 212.2 327 44.0
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.0e-52 211.5 327 44.3
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.3e-52 211.1 265 49.8
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.2e-52 210.3 327 44.0
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 2.2e-52 210.3 328 45.1
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 8.5e-52 208.4 327 43.4
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.1e-51 208.0 325 44.6
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.4e-51 207.6 340 43.8
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 2.5e-51 206.8 327 47.7
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 7.2e-51 205.3 327 44.3
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 9.4e-51 204.9 327 42.5
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 6.1e-50 202.2 330 43.3
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.0e-49 201.4 327 42.5
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.8e-49 200.7 329 43.2
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 1.8e-49 200.7 329 43.2
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 1.8e-49 200.7 327 48.0
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 2.3e-49 200.3 330 43.0
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 3.0e-49 199.9 336 42.3
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 3.9e-49 199.5 373 41.6
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 8.8e-49 198.4 327 43.4
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.1e-48 198.0 328 42.4
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 1.5e-48 197.6 367 41.4
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 2.0e-48 197.2 328 43.6
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 2.5e-48 196.8 327 42.8
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 7.4e-48 195.3 332 42.5
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 2.2e-47 193.7 332 42.8
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.8e-47 192.6 327 46.5
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.8e-47 192.6 327 46.5
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 3.1e-46 189.9 327 40.1
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 9.1e-46 188.3 327 41.0
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.6e-45 186.8 313 46.0
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 7.7e-45 185.3 330 41.5
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.0e-44 184.9 330 44.5
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.3e-44 184.5 313 45.7
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 5.0e-44 182.6 313 41.5
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 1.1e-43 181.4 301 43.2
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 1.4e-43 181.0 339 41.3
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 4.2e-43 179.5 266 45.1
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 7.2e-43 178.7 314 41.4
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 9.4e-43 178.3 301 42.2
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 9.4e-43 178.3 312 40.4
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 9.4e-43 178.3 313 44.7
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 3.6e-42 176.4 327 40.7
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.4e-41 174.5 327 40.1
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 2.3e-41 173.7 300 42.7
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 3.3e-40 169.9 327 38.5
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.4e-40 168.7 288 42.0
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 1.7e-39 167.5 301 39.2
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 2.8e-39 166.8 327 39.4
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 6.3e-39 165.6 325 40.3
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 6.3e-39 165.6 279 43.4
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 8.2e-39 165.2 300 46.0
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.1e-38 164.9 299 40.1
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 3.1e-38 163.3 310 40.0
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 9.1e-38 161.8 265 43.0
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-37 161.4 330 37.0
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 2.6e-37 160.2 267 42.7
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.5e-37 159.5 265 42.6
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 3.8e-36 156.4 301 38.5
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.0e-36 156.0 263 42.2
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.1e-35 154.8 299 40.5
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 7.2e-35 152.1 265 41.1
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 3.0e-33 146.7 329 40.7
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-32 144.8 265 39.6
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 4.8e-31 139.4 148 54.1
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 5.9e-29 132.5 148 60.8
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.3e-28 131.3 293 35.5
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 5.0e-28 129.4 116 67.2
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 5.5e-27 125.9 287 35.2
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 9.4e-27 125.2 287 34.8
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.7e-26 123.6 259 37.5
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 1.4e-25 121.3 151 49.0
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 1.2e-24 118.2 115 63.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.8e-23 112.8 75 74.7
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 4.8e-23 112.8 232 37.5
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.4e-22 111.3 332 30.4
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.8e-22 110.9 329 31.0
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 2.7e-21 107.1 74 74.3
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.9e-19 100.9 83 63.9
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 2.5e-19 100.5 327 29.7
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 9.4e-19 98.6 92 58.7
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 2.7e-18 97.1 284 31.0
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.8e-17 94.4 97 55.7
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 4.0e-17 93.2 89 61.8
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 8.8e-17 92.0 82 62.2
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 2.0e-16 90.9 92 62.0
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.7e-16 89.4 115 50.4
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 7.5e-16 89.0 115 50.4
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 7.5e-16 89.0 115 50.4
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 1.4e-14 84.7 52 80.8
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 5.9e-13 79.3 219 32.0
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 1.5e-11 74.7 352 27.0
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 2.5e-11 73.9 338 26.3
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 4.2e-11 73.2 78 51.3
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 2.8e-10 70.5 265 29.4
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 4.7e-10 69.7 48 77.1
CSS0001594 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.0e-09 68.6 64 64.1
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 4.0e-09 66.6 46 71.7
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 5.2e-09 66.2 46 69.6
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 1.7e-07 61.2 216 29.6
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 2.9e-07 60.5 233 28.3


User provided reference genes

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