Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.6e-108 395.6 227 100.0
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.9e-60 235.0 215 64.2
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.7e-56 221.5 195 63.6
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 4.3e-55 218.8 201 63.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.1e-53 211.1 197 59.9
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 8.8e-48 194.5 199 57.3
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.1e-45 184.5 206 52.9
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.6e-41 173.7 200 56.0
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.0e-40 171.0 205 51.2
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.0e-40 171.0 219 48.9
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.4e-40 170.6 212 51.9
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.3e-40 169.9 164 56.7
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 5.2e-40 168.7 217 47.0
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 8.8e-40 167.9 193 52.8
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 3.3e-39 166.0 216 46.8
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 4.4e-39 165.6 193 52.3
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 6.3e-38 161.8 215 45.6
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.4e-37 160.6 198 48.5
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.8e-37 160.2 193 50.8
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.8e-37 160.2 213 47.9
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 4.1e-37 159.1 171 55.6
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 4.1e-37 159.1 214 49.1
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 4.1e-37 159.1 213 46.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 9.1e-37 157.9 214 48.1
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.6e-36 156.4 194 51.5
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.6e-36 156.4 214 47.2
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 5.0e-35 152.1 217 47.0
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 5.0e-35 152.1 202 46.0
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.1e-34 151.0 193 50.3
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.5e-34 150.6 215 45.1
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 2.5e-34 149.8 200 48.0
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 9.4e-34 147.9 210 44.8
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.2e-33 147.5 217 46.1
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.6e-33 146.0 220 46.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 6.1e-33 145.2 214 46.7
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.0e-33 144.8 213 45.5
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.0e-32 144.4 175 53.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.4e-32 144.1 214 44.4
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.8e-32 143.7 205 47.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 2.3e-32 143.3 183 48.1
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 3.0e-32 142.9 211 44.5
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.0e-32 142.5 196 48.5
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 5.2e-32 142.1 186 45.2
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.5e-31 140.6 206 46.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.0e-31 140.2 213 43.7
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.6e-31 139.8 217 45.2
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.6e-31 139.8 215 47.4
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.4e-31 139.4 192 47.4
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.4e-31 139.0 193 47.2
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.4e-31 139.0 212 44.8
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.7e-31 138.7 213 43.7
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.7e-30 137.1 192 43.8
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 4.8e-30 135.6 189 47.6
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.1e-29 134.4 202 47.0
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-29 134.0 193 46.1
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.4e-29 132.1 201 44.3
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 7.0e-29 131.7 207 42.5
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 9.1e-29 131.3 189 45.5
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-28 131.0 207 42.0
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.2e-28 131.0 210 53.3
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.6e-28 130.6 205 41.0
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.6e-28 130.6 215 43.7
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 4.5e-28 129.0 210 39.5
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 7.7e-28 128.3 201 40.8
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 5.0e-27 125.6 196 45.4
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 5.0e-27 125.6 210 42.4
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 6.5e-27 125.2 204 44.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.2e-26 121.7 170 46.5
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.2e-25 120.9 189 42.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 3.6e-25 119.4 182 45.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-24 117.5 212 38.7
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-24 117.5 212 38.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.3e-24 116.7 190 43.7
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.0e-24 116.3 215 38.6
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 6.8e-24 115.2 146 50.7
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 2.6e-23 113.2 197 44.7
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 2.6e-23 113.2 210 41.0
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 4.4e-23 112.5 213 40.4
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 5.7e-23 112.1 190 41.1
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.5e-23 111.7 172 44.8
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 9.8e-23 111.3 201 39.3
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.3e-22 110.9 199 43.7
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.3e-22 110.9 211 42.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.7e-22 110.5 188 38.8
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 2.2e-22 110.2 172 43.6
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.2e-22 110.2 198 39.9
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 3.7e-22 109.4 171 45.6
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-21 107.8 207 39.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.4e-21 107.5 191 39.3
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.8e-21 107.1 209 39.2
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.4e-21 106.7 214 39.3
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.1e-21 106.3 194 39.7
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 7.0e-21 105.1 225 36.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 7.0e-21 105.1 190 37.9
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 7.0e-21 105.1 194 41.8
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.2e-20 104.4 144 43.1
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.5e-20 102.4 199 39.2
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.0e-19 101.3 198 37.9
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.7e-19 100.5 215 38.1
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 2.9e-19 99.8 183 42.1
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 2.9e-19 99.8 212 40.1
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.8e-19 99.4 201 38.8
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 5.0e-19 99.0 179 43.6
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 2.5e-18 96.7 220 39.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 3.3e-18 96.3 190 40.0
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 7.2e-18 95.1 192 37.0
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 9.5e-18 94.7 145 45.5
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.6e-17 94.0 146 45.2
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 2.8e-17 93.2 196 38.8
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 8.0e-17 91.7 167 40.7
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.0e-16 91.3 193 38.9
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 4.0e-16 89.4 185 38.9
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 8.9e-16 88.2 183 36.6
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.2e-15 87.8 184 38.0
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 3.4e-15 86.3 178 34.8
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.4e-15 86.3 178 34.8
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 3.4e-15 86.3 178 34.8
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.4e-15 85.9 206 35.9
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 5.7e-15 85.5 183 36.1
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 7.5e-15 85.1 183 36.1
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 9.8e-15 84.7 198 37.4
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.7e-14 84.0 221 33.0
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.2e-14 83.6 96 53.1
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.9e-14 83.2 194 39.2
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 4.9e-14 82.4 181 37.6
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 6.4e-14 82.0 185 34.1
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 6.4e-14 82.0 179 38.0
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 8.3e-14 81.6 181 37.6
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.4e-13 80.9 186 35.5
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.8e-13 80.5 188 37.2
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.2e-13 79.7 195 33.8
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.1e-13 79.3 136 42.6
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 5.4e-13 79.0 176 38.1
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 7.0e-13 78.6 179 36.3
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 7.0e-13 78.6 176 38.1
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 7.0e-13 78.6 176 38.1
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 7.0e-13 78.6 189 36.5
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.2e-12 77.8 176 38.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.6e-12 77.4 191 35.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.6e-12 77.4 190 35.8
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.6e-12 77.4 58 62.1
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 3.5e-12 76.3 191 34.0
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 5.9e-12 75.5 151 40.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 7.8e-12 75.1 199 32.2
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 3.9e-11 72.8 206 32.0
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 5.6e-10 68.9 126 46.8
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.2e-09 67.8 168 33.9
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 1.6e-09 67.4 195 31.8
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-09 67.0 95 47.4
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 3.6e-09 66.2 215 30.2
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.0e-08 62.8 85 43.5
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.2e-07 61.2 222 29.7
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 2.0e-07 60.5 162 34.0
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 2.6e-07 60.1 159 34.6
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 7.5e-07 58.5 85 45.9
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 1.3e-06 57.8 251 36.7
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.2e-06 57.0 171 40.4
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 3.7e-06 56.2 62 54.8
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 4.9e-06 55.8 57 54.4
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 6.4e-06 55.5 187 32.6


User provided reference genes

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