Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 2734.5 1434 100.0
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1958.7 1404 75.8
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1729.5 1562 62.7
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1661.7 1577 60.7
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1498.8 1433 58.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1460.3 1418 59.0
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1454.9 1442 58.5
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1414.8 1507 54.2
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1406.7 1546 53.0
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1404.0 1421 55.3
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1389.4 1453 55.2
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1387.9 1490 55.6
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1384.0 1488 55.9
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1379.8 1528 54.2
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1377.8 1425 57.1
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1374.4 1457 55.3
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1371.3 1540 53.2
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1355.9 1423 56.4
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1344.3 1443 53.7
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1335.5 1427 53.0
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1331.6 1422 54.5
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1330.5 1522 52.0
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1325.8 1428 55.7
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1302.0 1488 52.2
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1300.8 1430 53.8
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1293.5 1488 51.7
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1290.8 1556 50.8
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1290.0 1438 53.3
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1286.9 1487 52.8
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1285.4 1427 54.0
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1282.7 1476 53.0
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1278.8 1438 54.4
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1274.2 1455 53.1
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1269.6 1514 51.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1269.2 1517 51.7
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1268.8 1329 55.6
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1267.7 1438 54.4
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1266.9 1545 48.7
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1263.8 1487 50.4
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1262.3 1431 52.5
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1260.7 1422 52.5
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1255.4 1560 47.9
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1249.2 1440 51.5
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1247.3 1430 50.7
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1242.3 1470 52.8
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1240.7 1422 51.8
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1230.7 1483 50.3
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1224.9 1447 52.0
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1222.2 1432 49.1
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1218.8 1431 49.1
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1214.5 1581 47.5
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1198.3 1562 48.6
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1194.9 1802 43.2
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1190.6 1512 47.1
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1176.0 1490 48.8
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1175.2 1532 48.4
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1168.7 1431 50.3
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1167.1 1489 48.6
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1166.0 1421 50.2
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1166.0 1424 50.8
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1159.1 1438 50.5
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1152.5 1449 49.7
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1152.5 1449 47.8
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1149.4 1427 48.7
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1148.3 1429 49.8
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1145.6 1475 49.4
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1139.0 1475 48.8
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1133.2 1467 49.0
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1106.7 1471 48.5
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1101.3 1518 46.5
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 0.0e+00 1097.8 904 64.7
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1094.3 1462 47.6
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1093.6 1496 46.6
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 0.0e+00 1084.7 1417 48.4
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 0.0e+00 1084.7 1362 49.4
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1078.5 1473 47.1
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1078.2 1427 48.5
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.8e-312 1074.3 1375 51.2
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.3e-308 1061.6 1456 47.5
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 6.9e-308 1061.2 986 58.1
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.3e-306 1057.0 1432 46.9
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.5e-305 1052.7 1421 46.6
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.3e-302 1042.3 1417 46.6
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.3e-302 1042.3 1512 45.8
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 9.1e-300 1034.2 1034 56.5
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 9.4e-297 1024.2 1477 45.6
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.2e-291 1007.3 1417 44.5
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.8e-279 966.8 1274 48.4
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.2e-267 927.5 1472 44.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 6.6e-266 921.8 736 66.8
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 6.4e-253 878.6 2342 32.3
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.0e-250 871.3 1430 42.7
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.4e-223 781.2 795 54.5
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 5.3e-223 779.2 1215 41.4
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 5.8e-214 749.2 1421 35.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.3e-192 678.3 870 45.4
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.8e-184 650.6 1537 32.9
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 9.7e-177 625.5 1210 38.0
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 7.0e-175 619.4 1409 35.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.5e-174 617.1 536 62.3
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 4.7e-171 606.7 658 50.5
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 8.0e-163 579.3 871 41.4
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.2e-155 555.4 1377 30.9
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.1e-143 515.8 566 53.7
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.4e-127 461.5 410 63.4
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.4e-121 441.0 669 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 4.4e-121 440.7 1510 28.4
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.0e-110 403.7 557 45.8
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.1e-106 392.9 494 53.0
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.4e-106 391.7 1526 27.0
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 9.9e-105 386.3 509 44.8
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 6.4e-104 383.6 912 32.3
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 8.2e-99 366.7 1505 27.3
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.4e-87 329.3 369 51.5
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.1e-82 311.6 290 54.1
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.6e-78 299.3 374 46.3
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 5.5e-71 274.2 290 56.6
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 1.5e-63 249.6 202 66.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 2.4e-58 232.3 154 77.9
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 5.9e-57 227.6 168 73.2
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.1e-54 219.2 857 26.3
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.0e-46 190.7 307 38.4
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.8e-45 189.5 519 34.7
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.5e-44 186.4 152 67.1
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.4e-44 185.3 559 28.3
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.2e-41 176.8 129 71.3
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-39 170.2 673 25.6
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.6e-38 165.2 154 59.7
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.0e-32 144.8 413 27.6
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 5.6e-31 141.4 405 28.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.7e-27 128.6 543 28.0
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 9.2e-26 124.0 99 62.6
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.2e-22 113.6 354 27.1
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 8.1e-22 110.9 102 58.8
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 3.7e-19 102.1 181 37.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 8.3e-19 100.9 71 69.0
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.2e-14 87.0 253 28.9
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 8.1e-14 84.3 134 46.3
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.6e-09 70.1 108 43.5
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 1.1e-07 63.9 216 28.2
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 3.3e-07 62.4 229 27.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 3.3e-07 62.4 53 60.4
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 4.3e-07 62.0 79 45.6
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.8e-06 59.3 57 56.1


User provided reference genes

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