Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.2e-66 256.5 139 100.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.2e-62 242.3 139 94.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.8e-62 241.5 139 94.2
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.9e-61 239.2 139 94.2
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.2e-61 238.4 139 93.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.2e-61 237.3 139 92.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-60 236.5 139 92.8
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.2e-60 236.5 139 92.8
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.1e-60 235.7 139 91.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 3.6e-60 235.0 139 92.8
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.6e-60 235.0 140 91.4
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 4.7e-60 234.6 139 90.6
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.0e-59 233.4 140 91.4
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.4e-59 233.0 139 89.9
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.3e-59 232.3 139 89.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 3.0e-59 231.9 140 90.7
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 4.0e-59 231.5 139 91.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 5.2e-59 231.1 139 89.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 6.8e-59 230.7 139 89.2
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 6.8e-59 230.7 139 90.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 8.8e-59 230.3 139 90.6
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.5e-58 229.6 139 90.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.6e-58 228.8 139 89.9
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.4e-58 228.0 139 89.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.8e-58 226.9 139 89.9
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.3e-57 226.5 139 87.8
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.7e-57 224.9 139 87.8
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.9e-57 224.6 139 88.5
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 8.3e-57 223.8 139 84.9
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 8.3e-57 223.8 139 87.8
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.4e-56 221.1 139 86.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 5.4e-56 221.1 139 87.1
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.4e-56 221.1 139 86.3
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 7.0e-56 220.7 140 85.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 7.0e-56 220.7 141 87.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 7.0e-56 220.7 139 84.9
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.2e-55 219.9 139 85.6
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 84.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.7e-55 218.8 139 84.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.7e-55 218.8 138 84.8
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 4.5e-55 218.0 140 85.7
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 5.9e-55 217.6 139 87.8
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 5.9e-55 217.6 140 84.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 7.7e-55 217.2 139 85.6
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 7.7e-55 217.2 143 81.8
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 83.6
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.3e-54 216.5 139 84.9
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.3e-54 216.5 142 85.2
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.3e-54 216.5 141 85.1
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.7e-54 216.1 141 84.4
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-54 216.1 139 84.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.7e-54 216.1 139 87.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.7e-54 216.1 143 83.2
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.7e-54 216.1 140 85.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.3e-54 215.7 139 87.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.9e-54 215.3 138 85.5
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 3.8e-54 214.9 143 82.5
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 8.6e-54 213.8 140 83.6
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 8.6e-54 213.8 138 84.8
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 8.6e-54 213.8 142 83.1
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-53 213.4 139 83.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-53 213.4 139 83.5
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.1e-53 213.4 138 84.8
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.3e-53 211.8 141 82.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 82.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 4.3e-53 211.5 139 82.7
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 5.6e-53 211.1 139 82.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 5.6e-53 211.1 147 80.3
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.6e-53 211.1 140 82.1
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 9.5e-53 210.3 138 84.1
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 82.9
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.2e-52 209.9 139 83.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-52 209.5 139 82.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.6e-52 209.5 138 83.3
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.6e-52 209.5 164 73.8
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 2.8e-52 208.8 139 84.2
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 6.1e-52 207.6 140 81.4
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 6.1e-52 207.6 138 83.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-51 206.8 148 79.7
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.3e-51 205.7 138 82.6
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 4.0e-51 204.9 141 80.1
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 6.8e-51 204.1 153 77.1
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-50 203.4 151 76.2
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.2e-50 203.4 151 76.2
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-50 203.0 149 77.9
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.6e-50 202.2 139 80.6
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-49 199.9 139 79.9
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.7e-49 199.5 141 80.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.7e-49 199.5 160 70.6
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.7e-49 198.4 144 76.4
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 140 78.6
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.8e-48 196.1 144 75.0
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.4e-48 195.7 139 77.0
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.1e-48 194.9 139 77.7
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-47 193.4 152 73.0
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-47 193.4 141 78.0
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.2e-47 193.4 173 66.5
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 2.0e-47 192.6 140 75.7
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-47 192.2 155 71.6
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.7e-47 192.2 155 71.6
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 3.5e-47 191.8 146 73.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 5.9e-47 191.0 148 73.0
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-46 189.9 135 77.8
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.3e-46 189.9 139 76.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.9e-46 188.3 113 89.4
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 5.0e-46 188.0 113 92.0
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 4.3e-45 184.9 176 61.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.6e-44 183.0 168 63.7
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.0e-43 180.3 135 75.6
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.3e-43 179.1 137 72.3
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.0e-42 176.0 137 73.0
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 2.9e-41 172.2 114 83.3
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-40 169.1 116 81.9
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-39 166.8 113 80.5
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 4.6e-39 164.9 140 64.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 7.8e-39 164.1 167 58.1
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.0e-38 162.2 113 80.5
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 3.9e-38 161.8 139 65.5
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 6.6e-38 161.0 119 76.5
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-37 159.5 126 74.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 9.5e-37 157.1 135 67.4
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.1e-35 153.7 135 68.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 5.8e-34 147.9 138 66.7
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 4.9e-33 144.8 109 74.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 4.9e-33 144.8 137 58.4
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.4e-32 143.3 97 80.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 2.4e-32 142.5 131 64.9
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.4e-32 142.5 169 54.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.3e-30 136.7 155 55.5
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.6e-30 134.0 81 92.6
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 3.6e-28 128.6 115 66.1
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.7e-28 128.3 119 63.0
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 4.7e-28 128.3 136 56.6
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.7e-28 128.3 80 88.8
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 6.2e-28 127.9 138 55.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.2e-28 127.9 80 88.8
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 8.1e-28 127.5 85 80.0
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.1e-27 125.6 77 90.9
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.0e-27 125.2 80 87.5
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.8e-27 124.4 76 92.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-26 123.6 85 77.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 7.6e-26 120.9 130 56.2
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 6.0e-23 111.3 69 84.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-22 110.5 70 82.9
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.3e-22 110.2 69 87.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.0e-22 109.0 58 93.1
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.8e-19 99.8 101 64.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.7e-17 93.2 70 70.0
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.4e-16 89.4 61 85.2
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 9.3e-16 87.4 77 63.6
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.2e-15 87.0 69 72.5
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 4.8e-12 75.1 72 61.1
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 4.8e-12 75.1 72 61.1
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 8.1e-12 74.3 131 38.9
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.5e-10 70.1 58 60.3
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-08 62.0 97 45.4
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 4.2e-08 62.0 97 45.4
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 6.0e-07 58.2 37 75.7
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 6.0e-07 58.2 49 63.3
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 6.0e-07 58.2 37 75.7
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 7.9e-07 57.8 51 60.8
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.3e-06 57.0 51 60.8


User provided reference genes

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