Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.1e-75 284.6 143 100.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.8e-65 251.5 142 85.9
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.0e-61 239.2 140 82.9
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 5.7e-61 237.7 140 82.9
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 3.1e-59 231.9 136 80.9
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.6e-58 228.8 148 75.7
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.0e-57 226.9 136 79.4
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.5e-57 224.2 137 78.1
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.5e-57 223.8 135 81.5
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-56 223.0 139 78.4
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 5.5e-56 221.1 135 80.0
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 3.6e-55 218.4 149 79.2
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 4.7e-55 218.0 142 73.9
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 6.1e-55 217.6 142 73.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 8.0e-55 217.2 137 78.8
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.3e-54 215.7 142 73.2
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 4.0e-54 214.9 137 77.4
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 5.2e-54 214.5 136 76.5
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.2e-53 213.4 142 72.5
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.2e-52 209.1 149 68.5
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.2e-52 209.1 140 74.3
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 2.2e-52 209.1 140 72.1
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 4.8e-52 208.0 138 73.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.3e-52 207.6 139 74.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.3e-52 207.6 139 74.8
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.1e-51 206.8 138 68.8
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.4e-51 205.7 142 72.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.4e-51 205.7 136 75.0
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 3.1e-51 205.3 136 74.3
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 3.1e-51 205.3 147 71.4
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.1e-51 204.9 137 75.2
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.3e-51 204.5 136 72.1
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.3e-51 204.5 136 72.1
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 7.0e-51 204.1 141 72.3
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 9.1e-51 203.8 137 74.5
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.2e-50 203.4 137 73.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.6e-50 203.0 138 75.4
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.0e-50 202.6 138 72.5
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.0e-50 202.6 136 71.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.7e-50 202.2 138 73.9
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 4.5e-50 201.4 137 75.2
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.3e-49 199.9 137 73.7
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.7e-49 199.5 138 71.0
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.5e-48 195.7 140 68.6
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 5.5e-48 194.5 138 69.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.5e-48 194.5 141 68.8
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 5.5e-48 194.5 136 72.1
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 9.4e-48 193.7 134 71.6
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.7e-47 192.2 144 68.8
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 2.7e-47 192.2 144 67.4
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.7e-47 192.2 143 67.8
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.7e-47 192.2 138 73.9
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.6e-47 191.8 144 66.7
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.7e-47 191.4 135 71.1
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 4.7e-47 191.4 137 69.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 8.0e-47 190.7 145 64.1
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.0e-47 190.7 139 67.6
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 8.0e-47 190.7 141 68.1
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 8.0e-47 190.7 140 68.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.0e-46 190.3 142 69.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-46 190.3 134 70.1
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.3e-46 189.1 142 67.6
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.0e-46 188.7 135 65.9
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.2e-46 188.0 136 69.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 8.8e-46 187.2 135 68.1
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.2e-45 186.8 134 70.1
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.5e-45 186.4 139 67.6
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.5e-45 186.4 139 67.6
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.5e-45 186.4 134 70.1
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.0e-45 186.0 140 67.1
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.6e-45 185.7 136 67.6
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 3.4e-45 185.3 140 67.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 3.4e-45 185.3 136 67.6
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.4e-45 185.3 135 67.4
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 3.4e-45 185.3 136 67.6
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.4e-45 184.9 134 72.4
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 4.4e-45 184.9 117 72.6
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 4.4e-45 184.9 141 62.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 7.5e-45 184.1 141 68.8
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 7.5e-45 184.1 149 65.8
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 9.8e-45 183.7 135 66.7
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.8e-45 183.7 135 66.7
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 9.8e-45 183.7 132 70.5
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.7e-44 183.0 139 66.9
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.2e-44 182.6 140 65.7
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.8e-44 182.2 135 65.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.8e-44 182.2 139 66.2
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 4.8e-44 181.4 139 66.2
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 6.3e-44 181.0 139 65.5
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 6.3e-44 181.0 139 65.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 6.3e-44 181.0 139 65.5
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 8.3e-44 180.6 139 65.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 8.3e-44 180.6 139 65.5
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 8.3e-44 180.6 134 68.7
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.1e-43 180.3 136 67.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-43 179.9 136 66.2
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.4e-43 179.9 136 66.2
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 5.4e-43 177.9 137 66.4
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 5.4e-43 177.9 137 66.4
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 5.4e-43 177.9 137 66.4
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 7.0e-43 177.6 139 64.0
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 7.0e-43 177.6 133 66.9
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 9.1e-43 177.2 135 65.9
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 9.1e-43 177.2 136 66.2
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.2e-42 176.8 144 65.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 2.0e-42 176.0 137 64.2
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 5.9e-42 174.5 131 66.4
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 7.7e-42 174.1 138 65.2
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.9e-41 172.2 136 65.4
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.9e-41 172.2 143 65.7
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.5e-40 169.9 136 58.8
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.4e-38 163.3 135 60.7
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.4e-35 153.3 94 79.8
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.1e-35 152.1 136 58.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.9e-33 145.6 84 78.6
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 2.9e-33 145.6 84 78.6
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.9e-33 145.6 76 92.1
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.7e-31 138.3 113 62.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.1e-31 137.9 146 54.1
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 8.0e-31 137.5 76 85.5
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.0e-30 135.6 76 84.2
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 5.8e-29 131.3 76 78.9
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 2.7e-26 122.5 74 79.7
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.4e-21 105.1 58 87.9
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.4e-19 100.1 76 59.2
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 4.1e-19 98.6 110 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 5.4e-19 98.2 140 43.6
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 7.0e-19 97.8 74 63.5
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.6e-18 95.1 49 93.9
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 5.2e-14 81.6 114 37.7
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 5.8e-13 78.2 61 62.3
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 5.8e-13 78.2 61 62.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.2e-10 70.5 62 59.7


User provided reference genes

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