Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.2e-275 952.6 479 100.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.7e-210 736.1 406 89.7
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.2e-197 690.6 407 83.3
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 6.5e-186 654.4 394 81.5
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.1e-184 649.4 391 81.8
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.8e-183 646.4 392 80.6
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.8e-183 646.4 391 82.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.0e-183 645.2 391 80.8
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.0e-183 645.2 391 81.1
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.0e-183 645.2 391 81.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.2e-183 644.8 403 78.2
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.5e-182 643.3 391 80.6
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.3e-181 640.2 391 80.1
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.7e-181 638.6 397 78.8
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.3e-181 637.9 391 81.1
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 6.3e-181 637.9 389 81.0
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.0e-179 632.9 387 80.1
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.5e-179 632.1 391 79.3
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.0e-178 628.2 398 79.4
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.1e-177 627.1 391 78.8
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.9e-177 626.3 403 77.9
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 9.5e-177 624.0 392 78.1
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 6.1e-176 621.3 390 79.0
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 6.1e-176 621.3 378 81.0
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.0e-175 620.5 390 77.7
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.8e-175 619.8 387 78.8
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.2e-175 618.2 414 74.2
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 6.8e-175 617.8 414 73.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 8.9e-175 617.5 391 77.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.5e-174 616.7 414 73.9
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.0e-174 616.3 392 76.0
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 4.4e-174 615.1 388 77.3
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 5.7e-174 614.8 400 76.5
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.8e-174 614.0 393 76.6
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 6.3e-173 611.3 388 76.8
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 6.3e-173 611.3 388 76.8
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 6.3e-173 611.3 388 76.8
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 6.3e-173 611.3 390 77.7
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-172 610.5 388 77.1
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.4e-172 610.1 391 77.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.4e-172 610.1 393 75.8
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.4e-172 609.4 390 77.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.2e-172 609.0 391 77.2
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 5.4e-172 608.2 391 74.7
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.2e-172 607.4 387 79.3
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-171 606.7 392 76.8
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.6e-171 606.7 385 77.4
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.6e-171 606.7 391 74.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.7e-171 605.9 394 75.4
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 2.7e-171 605.9 394 75.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.7e-171 605.9 394 75.4
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.7e-171 605.9 394 75.4
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 3.5e-171 605.5 392 76.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.5e-171 605.5 393 76.3
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.6e-171 605.1 381 76.9
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 5.9e-171 604.7 382 78.3
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 5.9e-171 604.7 388 77.6
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.3e-170 603.6 394 75.1
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.7e-170 603.2 392 76.0
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-170 602.8 395 75.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.3e-170 602.8 371 79.2
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 3.9e-170 602.1 381 77.4
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 5.0e-170 601.7 390 76.9
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 6.6e-170 601.3 392 76.3
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.1e-169 600.5 392 73.7
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 3.3e-169 599.0 385 76.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 9.5e-169 597.4 392 73.2
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 2.8e-168 595.9 393 74.8
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.8e-168 595.9 392 73.0
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.4e-167 593.6 386 77.7
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.8e-167 593.2 391 74.4
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.8e-167 593.2 387 73.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 2.3e-167 592.8 395 74.2
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 5.2e-167 591.7 392 73.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.2e-166 590.5 386 77.5
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.5e-166 590.1 392 74.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 4.4e-166 588.6 410 71.7
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 4.4e-166 588.6 404 72.0
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 5.8e-166 588.2 386 74.4
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 9.8e-166 587.4 383 75.7
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 3.7e-165 585.5 404 71.8
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 6.4e-165 584.7 390 72.8
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.4e-164 582.8 379 76.0
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 7.0e-164 581.3 390 72.1
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 9.2e-164 580.9 390 73.1
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 3.5e-163 578.9 390 71.8
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.0e-162 575.9 393 72.3
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.9e-161 573.2 387 71.6
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 9.5e-161 570.9 385 71.7
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-160 570.1 387 71.1
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.6e-160 568.9 393 72.0
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 5.2e-159 565.1 391 72.1
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 6.8e-159 564.7 387 71.6
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.9e-157 559.3 388 70.4
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 8.3e-157 557.8 386 71.0
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.1e-156 557.4 390 69.7
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 2.4e-156 556.2 390 70.8
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.4e-156 556.2 371 73.6
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 5.4e-156 555.1 390 70.5
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.7e-154 550.1 388 69.6
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.5e-153 546.2 388 68.6
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.5e-153 546.2 389 69.2
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 4.3e-153 545.4 389 69.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.6e-152 543.5 393 69.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.8e-152 542.7 381 69.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.6e-152 542.3 385 69.4
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.8e-151 540.0 388 68.0
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.2e-151 538.5 399 65.2
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.5e-150 537.0 388 68.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.5e-150 537.0 388 66.2
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 7.6e-150 534.6 388 68.0
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 7.1e-148 528.1 390 67.4
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-147 527.3 378 69.0
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 2.1e-147 526.6 323 79.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.7e-146 523.5 362 71.3
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.1e-145 520.8 397 66.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.1e-143 512.7 390 62.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.8e-143 511.5 389 63.2
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.8e-141 505.8 395 61.3
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.5e-134 483.8 382 63.1
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 4.9e-133 478.8 325 70.8
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 9.3e-132 474.6 296 78.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.9e-129 466.8 388 60.8
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.8e-120 436.4 388 57.5
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 3.7e-112 409.5 388 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 3.5e-107 392.9 412 47.8
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.3e-106 390.2 397 47.9
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.0e-101 374.8 226 81.4
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.4e-100 370.9 378 48.4
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 4.4e-89 332.8 429 40.8
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.7e-88 329.7 210 74.3
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 8.2e-88 328.6 442 39.4
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.0e-77 295.0 194 75.3
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 9.2e-63 245.4 183 68.3
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 2.9e-61 240.4 151 77.5
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 6.4e-56 222.6 173 61.8
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 5.4e-47 193.0 160 61.9
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.9e-39 167.9 114 69.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.6e-35 153.7 97 77.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.1e-31 142.1 149 52.3
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 7.3e-20 102.8 71 64.8
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.0e-18 97.1 55 80.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.0e-13 82.4 362 25.4
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.8e-11 73.6 368 23.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.9e-08 64.3 69 46.4
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 6.4e-08 63.2 51 56.9
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 1.1e-07 62.4 50 56.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.4e-07 62.0 51 56.9
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 9.3e-07 59.3 45 57.8


User provided reference genes

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