Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 4.3e-275 950.7 469 100.0
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 8.2e-234 813.5 482 83.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 4.2e-230 801.2 452 89.4
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.4e-225 785.4 484 81.4
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.5e-224 781.2 484 81.6
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.5e-224 781.2 484 81.4
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 5.2e-220 767.7 490 78.4
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.2e-218 762.3 484 77.3
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.8e-212 742.7 485 76.5
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 8.9e-212 740.3 484 74.2
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 8.9e-212 740.3 484 74.2
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.6e-211 738.8 484 74.8
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 3.7e-210 734.9 483 73.5
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 3.7e-210 734.9 483 73.5
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.9e-210 734.6 484 74.8
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.1e-209 733.4 511 70.3
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.3e-207 726.5 484 73.6
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.5e-206 723.0 484 72.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.6e-206 721.1 398 91.7
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 7.3e-206 720.7 484 72.1
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 9.5e-206 720.3 484 72.7
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.8e-204 716.1 484 73.1
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 2.3e-204 715.7 484 72.9
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 3.4e-203 711.8 484 72.9
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.7e-202 709.5 484 71.9
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.2e-202 709.1 484 73.1
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 3.7e-202 708.4 483 71.4
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.9e-201 706.1 484 72.3
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 2.4e-201 705.7 486 72.0
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.4e-201 705.7 484 71.7
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 3.2e-201 705.3 492 72.4
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 9.2e-201 703.7 482 71.8
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.1e-200 702.6 482 72.0
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 6.0e-200 701.0 484 72.1
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 7.8e-200 700.7 484 71.1
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.7e-199 699.5 484 70.9
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.1e-199 698.0 482 71.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.5e-198 695.7 484 70.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 4.3e-198 694.9 487 69.8
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.6e-198 694.5 484 70.7
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.6e-197 693.0 484 70.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 2.8e-197 692.2 484 72.5
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.8e-197 692.2 485 71.3
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 3.6e-197 691.8 484 71.5
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-196 689.9 486 71.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.3e-196 689.1 484 69.8
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.3e-196 689.1 484 70.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 4.0e-196 688.3 484 70.2
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 5.8e-195 684.5 484 69.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 7.5e-195 684.1 487 70.2
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 7.5e-195 684.1 484 69.0
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.3e-194 683.3 484 70.5
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 3.7e-194 681.8 484 71.7
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 6.4e-194 681.0 484 68.4
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 8.3e-194 680.6 484 69.6
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.3e-194 680.6 484 69.0
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.9e-193 679.5 480 69.0
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.4e-193 679.1 484 70.2
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-193 678.7 488 68.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.2e-193 678.7 484 67.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.1e-193 678.3 488 68.0
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 7.1e-193 677.6 449 73.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.2e-192 676.8 484 68.0
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.7e-192 675.6 500 67.4
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 7.8e-192 674.1 485 69.3
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.0e-191 673.7 484 69.0
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.7e-191 672.9 484 67.4
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 3.9e-191 671.8 484 67.8
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.5e-190 669.1 504 66.7
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.3e-190 668.3 484 68.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 5.6e-190 667.9 484 68.8
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 7.3e-190 667.5 484 68.2
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.6e-189 666.4 484 67.1
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 2.8e-189 665.6 485 67.0
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 3.6e-189 665.2 480 70.6
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 5.2e-188 661.4 487 67.4
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.5e-187 659.8 484 67.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 3.4e-187 658.7 485 67.4
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 9.9e-187 657.1 480 70.0
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.3e-186 656.8 487 66.7
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.9e-186 655.6 507 64.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 8.4e-186 654.1 484 68.6
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-185 653.7 521 64.3
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.1e-185 653.7 488 67.2
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.9e-185 652.9 486 66.5
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 7.1e-185 651.0 488 66.2
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 9.2e-185 650.6 488 66.6
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.2e-184 650.2 484 66.3
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 7.8e-184 647.5 484 66.7
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.0e-183 647.1 488 66.4
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.7e-183 646.4 488 66.2
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 5.1e-183 644.8 488 65.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 8.7e-183 644.0 488 66.4
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 8.7e-183 644.0 488 66.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 9.6e-182 640.6 569 59.8
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.6e-181 639.8 415 73.5
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 6.2e-181 637.9 485 66.0
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 5.3e-180 634.8 469 69.9
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 9.0e-180 634.0 512 63.3
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.3e-178 630.2 486 64.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.7e-178 629.8 483 64.2
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.9e-177 626.3 483 64.0
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 8.7e-175 617.5 483 62.7
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.6e-173 613.2 430 71.4
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 6.9e-172 607.8 520 62.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 9.0e-172 607.4 503 61.6
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 6.4e-170 601.3 430 67.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.2e-168 597.0 559 58.5
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.1e-168 596.3 487 61.0
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.5e-166 589.3 415 69.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.3e-165 587.0 485 62.9
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.4e-164 582.8 471 62.0
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.3e-162 577.0 486 61.1
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 7.1e-161 571.2 472 59.7
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.2e-155 553.9 424 66.0
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 2.0e-155 553.1 489 58.7
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 8.2e-141 504.6 473 55.6
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.1e-134 484.2 359 69.9
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 8.2e-133 478.0 497 53.1
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 4.0e-103 379.4 252 69.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.4e-95 354.4 597 36.5
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 5.0e-90 335.9 523 41.3
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 9.8e-86 321.6 260 65.0
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.8e-80 303.5 182 73.6
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.1e-79 301.6 210 66.2
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.0e-78 297.4 215 74.9
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 6.0e-75 285.8 378 46.6
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 6.0e-75 285.8 250 58.0
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 6.4e-69 265.8 541 35.1
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.1e-65 255.0 175 66.9
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.3e-63 246.1 169 75.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 7.1e-60 235.7 258 50.0
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 4.9e-53 213.0 475 33.5
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 4.6e-51 206.5 171 62.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-41 174.9 432 31.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.4e-39 167.5 379 31.7
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.7e-35 154.1 212 43.9
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.0e-34 152.1 455 28.4
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.7e-33 146.4 452 27.0
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-30 138.7 221 38.0
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.9e-19 99.4 109 50.5
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 3.0e-18 97.4 167 43.1
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 6.7e-18 96.3 70 71.4
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.7e-16 91.7 70 67.1
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 8.5e-13 79.3 70 55.7
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 6.1e-11 73.2 106 38.7
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 3.3e-09 67.4 71 52.1
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 4.4e-09 67.0 70 52.9
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.8e-08 63.5 51 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.5e-06 57.0 65 52.3


User provided reference genes

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