Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 4.5e-161 571.2 293 100.0
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 6.9e-154 547.4 293 94.9
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 2.3e-141 505.8 294 86.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.1e-140 503.4 298 85.9
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.3e-140 501.9 297 86.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 9.7e-140 500.4 297 85.9
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.8e-138 496.1 301 85.4
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 7.7e-137 490.7 294 85.4
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.9e-135 486.1 297 85.2
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 5.5e-135 484.6 296 82.8
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.6e-134 481.9 282 86.2
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 7.9e-134 480.7 297 82.2
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 6.7e-133 477.6 296 82.1
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 8.8e-133 477.2 298 79.5
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.1e-132 476.9 297 81.5
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 2.0e-132 476.1 297 79.5
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.5e-132 475.7 294 80.3
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.5e-132 475.7 294 80.3
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 2.2e-131 472.6 297 81.5
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.8e-131 472.2 298 79.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.8e-131 472.2 298 79.9
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 3.7e-131 471.9 296 81.8
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.7e-131 471.9 297 79.8
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 4.8e-131 471.5 297 80.1
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 6.3e-131 471.1 297 80.8
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 6.3e-131 471.1 296 79.1
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 1.8e-130 469.5 293 81.9
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.8e-130 469.5 297 79.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 5.3e-130 468.0 293 80.2
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 5.3e-130 468.0 297 80.5
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 6.9e-130 467.6 296 80.1
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-129 466.8 297 79.5
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.2e-129 466.8 297 78.8
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 1.2e-129 466.8 294 78.6
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.2e-129 466.8 297 80.1
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.0e-129 466.1 298 78.5
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 2.0e-129 466.1 294 79.3
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 2.6e-129 465.7 294 78.9
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 2.6e-129 465.7 294 78.9
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 3.4e-129 465.3 296 80.4
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 7.7e-129 464.2 297 77.8
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.3e-128 463.4 295 79.3
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.7e-128 463.0 297 79.1
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 2.2e-128 462.6 297 78.1
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 2.9e-128 462.2 297 78.5
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 2.9e-128 462.2 295 78.6
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.9e-128 462.2 297 78.5
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 6.5e-128 461.1 297 77.4
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.1e-127 460.3 296 78.7
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.9e-127 459.5 305 77.4
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 2.5e-127 459.1 297 77.8
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 2.5e-127 459.1 294 77.2
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 5.5e-127 458.0 297 79.1
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 9.4e-127 457.2 297 76.8
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.2e-126 456.8 296 79.7
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.6e-126 456.4 297 78.1
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.6e-126 456.4 298 79.2
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 2.1e-126 456.1 297 76.4
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.7e-126 455.7 297 78.8
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 4.7e-126 454.9 297 75.8
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 6.1e-126 454.5 294 77.9
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.9e-126 454.1 297 76.4
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 7.9e-126 454.1 305 76.7
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.0e-125 453.8 299 76.3
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.0e-125 453.8 341 71.0
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.8e-125 453.0 297 76.1
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 5.1e-125 451.4 294 77.6
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.7e-125 451.1 315 73.0
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 8.8e-125 450.7 315 73.3
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 8.8e-125 450.7 294 77.2
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.5e-124 449.9 291 76.6
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 4.4e-124 448.4 291 75.9
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 7.4e-124 447.6 297 77.8
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 9.7e-124 447.2 292 77.7
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 2.8e-123 445.7 291 75.3
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 2.8e-123 445.7 291 75.6
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 2.8e-123 445.7 297 76.8
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.3e-123 444.5 292 75.3
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 6.3e-123 444.5 297 77.1
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 8.2e-123 444.1 295 75.3
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 8.2e-123 444.1 297 74.7
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.4e-122 443.4 291 74.2
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.8e-122 443.0 291 74.6
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.8e-122 443.0 291 75.3
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.8e-122 443.0 291 75.3
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.8e-122 443.0 314 71.7
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.8e-122 443.0 292 74.0
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 5.3e-122 441.4 291 74.9
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 2.6e-121 439.1 298 75.5
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 7.7e-121 437.6 291 74.6
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 7.7e-121 437.6 296 75.0
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.0e-120 437.2 298 73.5
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.3e-120 436.8 297 75.1
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 2.2e-120 436.0 281 77.6
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 2.9e-120 435.6 298 75.2
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 2.9e-120 435.6 274 79.6
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 8.5e-120 434.1 262 83.2
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 1.9e-119 433.0 282 76.6
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 4.2e-119 431.8 296 72.6
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 5.5e-119 431.4 296 74.3
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 4.7e-118 428.3 291 74.6
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-117 426.8 297 72.1
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.3e-117 426.0 297 71.7
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 6.7e-117 424.5 295 72.9
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 5.7e-116 421.4 277 77.6
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.4e-116 421.0 291 72.5
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.2e-115 417.5 250 82.4
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 9.4e-111 404.1 296 71.6
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.8e-107 392.5 219 89.5
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 1.4e-106 390.2 297 72.1
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.2e-103 379.0 320 63.1
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.1e-98 362.5 287 61.0
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.9e-95 353.2 221 79.6
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 5.5e-95 351.7 296 63.5
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.6e-92 342.8 290 58.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 3.7e-91 339.0 222 78.8
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.1e-90 335.9 290 58.6
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 7.0e-90 334.7 223 77.6
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 1.6e-89 333.6 215 74.9
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.5e-89 332.0 290 57.9
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 7.8e-89 331.3 279 62.4
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 1.6e-86 323.6 262 61.1
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 2.1e-86 323.2 288 56.9
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 6.1e-86 321.6 295 57.6
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 4.4e-84 315.5 275 62.2
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 1.9e-82 310.1 220 70.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 7.0e-74 281.6 231 64.1
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 2.3e-72 276.6 256 55.5
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 2.8e-70 269.6 175 78.9
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 8.6e-64 248.1 150 83.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 1.9e-63 246.9 223 58.7
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.4e-59 231.5 214 60.3
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.4e-58 229.9 162 68.5
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 4.8e-54 215.7 143 69.9
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-53 214.2 149 69.8
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.0e-48 196.4 135 71.1
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 9.6e-47 191.4 266 38.7
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 2.4e-45 186.8 181 58.6
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-41 174.5 138 65.2
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 3.7e-38 162.9 307 35.5
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 1.1e-37 161.4 105 75.2
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 3.0e-32 143.3 105 64.8
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 5.1e-32 142.5 106 71.7
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 3.3e-31 139.8 132 59.8
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.6e-28 130.2 270 30.4
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 4.3e-23 112.8 116 56.0
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 3.7e-22 109.8 128 50.8
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 3.1e-21 106.7 65 80.0
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 4.1e-21 106.3 81 69.1
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-17 94.7 106 50.9
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 3.0e-16 90.1 106 49.1
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 5.3e-13 79.3 97 47.4
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 3.6e-09 66.6 95 43.2
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 7.9e-09 65.5 39 76.9
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.0e-08 65.1 52 63.5
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 5.1e-08 62.8 45 64.4
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.1e-07 61.6 52 59.6
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.1e-07 61.6 52 59.6
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 6.3e-06 55.8 53 54.7


User provided reference genes

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