Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 0.0e+00 1469.5 817 100.0
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 2.4e-305 1052.0 846 69.0
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 5.7e-230 801.6 902 52.2
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 4.1e-220 768.8 830 54.7
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.5e-206 723.8 851 50.6
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 4.2e-201 705.7 867 48.9
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 2.7e-179 633.3 850 45.9
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 4.4e-166 589.3 842 42.8
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 9.2e-164 581.6 861 40.9
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 1.2e-163 581.3 851 43.9
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 2.3e-162 577.0 862 41.0
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 3.0e-162 576.6 836 42.1
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 4.4e-158 562.8 862 42.5
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 3.0e-154 550.1 856 40.1
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 8.6e-154 548.5 804 42.0
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 1.9e-153 547.4 858 41.1
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 4.3e-153 546.2 847 40.3
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 9.5e-153 545.0 832 42.9
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 4.7e-152 542.7 823 42.3
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 8.1e-152 542.0 854 40.5
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 1.4e-151 541.2 846 41.1
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 5.2e-151 539.3 873 39.7
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 2.2e-149 533.9 834 40.8
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 8.4e-149 531.9 853 41.1
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.1e-148 531.6 851 41.8
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 2.1e-147 527.3 856 41.5
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 3.5e-147 526.6 837 39.9
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 1.0e-146 525.0 839 38.5
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 2.3e-146 523.9 839 39.9
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 3.9e-146 523.1 855 38.1
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 1.9e-145 520.8 853 39.4
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 7.3e-145 518.8 843 41.3
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 7.3e-145 518.8 843 41.3
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 1.2e-144 518.1 878 38.0
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 6.2e-144 515.8 849 38.2
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.4e-143 514.6 845 39.1
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 4.0e-143 513.1 853 38.2
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 4.0e-143 513.1 823 40.0
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 5.2e-143 512.7 835 39.2
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 6.8e-143 512.3 859 38.8
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 8.9e-143 511.9 815 41.8
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 1.2e-142 511.5 853 39.5
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 7.1e-140 502.3 857 39.7
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 1.6e-139 501.1 856 38.6
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 2.1e-139 500.7 856 38.6
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 2.3e-138 497.3 892 37.3
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 1.3e-136 491.5 850 39.2
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 2.6e-134 483.8 854 38.2
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 8.4e-133 478.8 827 38.9
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.9e-132 477.6 835 38.0
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 5.4e-132 476.1 853 38.0
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.0e-130 471.9 872 36.9
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 1.7e-130 471.1 832 39.4
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 2.5e-129 467.2 891 36.3
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 5.6e-129 466.1 820 37.1
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 9.6e-129 465.3 879 37.2
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 1.6e-128 464.5 880 36.4
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 2.8e-128 463.8 825 39.4
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 8.1e-128 462.2 876 37.8
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 8.1e-128 462.2 906 35.9
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.8e-127 461.1 855 37.7
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 2.4e-127 460.7 892 36.1
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.9e-127 459.1 907 35.3
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 7.6e-126 455.7 772 37.6
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 1.7e-125 454.5 865 34.6
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 8.4e-125 452.2 849 38.0
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 3.2e-124 450.3 822 38.1
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 3.5e-123 446.8 862 36.2
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.0e-122 445.3 788 36.5
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 2.3e-122 444.1 847 36.5
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 3.9e-122 443.4 824 41.0
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 3.7e-120 436.8 903 34.7
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 9.0e-119 432.2 900 34.2
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 4.9e-117 426.4 849 35.7
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 1.9e-116 424.5 843 36.2
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 1.2e-115 421.8 824 36.7
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 1.0e-114 418.7 850 36.4
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 2.3e-114 417.5 831 34.8
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 3.0e-114 417.2 839 35.3
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 2.1e-112 411.0 869 34.3
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 2.8e-112 410.6 850 36.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 2.4e-111 407.5 820 34.9
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 5.3e-111 406.4 849 35.6
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 5.9e-110 402.9 821 37.1
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 5.5e-108 396.4 826 38.3
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.7e-107 394.0 852 36.7
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 1.3e-104 385.2 822 35.6
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 4.8e-104 383.3 675 41.2
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 1.8e-103 381.3 938 33.6
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 1.7e-101 374.8 808 35.0
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 5.0e-101 373.2 858 32.1
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 3.2e-100 370.5 796 34.2
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 7.2e-100 369.4 797 34.5
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 3.6e-99 367.1 455 48.1
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 1.6e-91 341.7 832 33.8
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.5e-89 335.1 911 32.7
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.4e-87 328.6 800 32.2
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 4.5e-86 323.6 770 32.3
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 1.6e-83 315.1 715 32.7
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 2.3e-82 311.2 820 32.2
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 3.5e-78 297.4 780 29.2
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.2e-77 294.7 813 30.0
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 8.5e-77 292.7 716 36.9
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 6.8e-74 283.1 790 30.1
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 4.8e-72 276.9 478 40.0
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.2e-70 272.3 846 30.9
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.0e-69 269.2 626 32.9
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 1.1e-68 265.8 787 31.9
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 2.5e-68 264.6 735 29.9
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 3.2e-68 264.2 839 27.5
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 4.4e-65 253.8 777 27.8
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 2.8e-64 251.1 822 28.8
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 6.3e-64 250.0 694 29.1
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 2.3e-61 241.5 670 30.3
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 5.0e-61 240.4 586 31.2
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 8.0e-59 233.0 769 27.4
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.7e-53 215.3 800 25.8
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.6e-51 208.8 807 25.8
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 5.2e-50 203.8 772 25.5
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.9e-48 198.0 564 28.0
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 9.2e-47 193.0 757 29.2
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 5.6e-44 183.7 588 27.6
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 1.2e-43 182.6 581 28.2
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 4.7e-43 180.6 590 28.8
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.4e-41 174.5 471 29.7
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 2.9e-40 171.4 724 23.8
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 8.3e-40 169.9 572 27.4
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 1.9e-39 168.7 591 27.9
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 2.4e-39 168.3 591 27.9
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 2.4e-39 168.3 591 27.9
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 3.2e-39 167.9 587 28.1
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 3.2e-39 167.9 659 26.6
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 6.0e-38 163.7 490 29.6
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.0e-37 162.9 627 27.1
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.1e-36 159.5 580 26.4
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 3.3e-36 157.9 619 24.7
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 4.3e-36 157.5 570 27.5
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.3e-36 157.5 633 25.8
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 1.4e-34 152.5 702 23.6
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 1.4e-34 152.5 648 23.3
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 3.1e-34 151.4 714 23.5
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 6.8e-34 150.2 424 29.2
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 1.3e-32 146.0 582 25.4
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.7e-32 145.6 432 29.9
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 1.0e-29 136.3 285 38.6
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 3.0e-29 134.8 142 50.7
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 5.6e-28 130.6 548 26.6
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 1.4e-23 115.9 109 56.0
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.7e-21 109.0 316 30.1
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 1.5e-20 105.9 186 36.0
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.3e-19 102.8 311 28.3
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 1.8e-18 99.0 170 37.1
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 1.7e-16 92.4 536 29.5
Rhsim02G0161700 Rhododendron simsii HOM05D004088 ORTHO05D004736 6.4e-16 90.5 72 68.1
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.9e-15 89.0 176 34.1
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 6.7e-13 80.5 566 21.0
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 2.5e-12 78.6 175 30.9
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 2.8e-11 75.1 497 22.7
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 9.0e-10 70.1 787 20.6
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 9.0e-10 70.1 491 21.4
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 1.2e-09 69.7 321 25.2
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 1.2e-09 69.7 170 31.2
CDE12G0022 Ceratophyllum demersum HOM05D000617 ORTHO05D004736 2.0e-09 68.9 76 51.3
Os03g0784500 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 3.4e-09 68.2 158 29.1
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 3.4e-09 68.2 555 21.6
BcaC05g27073 Brassica carinata HOM05D000169 ORTHO05D007693 5.8e-09 67.4 171 32.7
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 2.4e-07 62.0 577 21.3
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 5.5e-07 60.8 734 20.2
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 5.5e-07 60.8 364 23.4
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 7.1e-07 60.5 195 27.2
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 7.1e-07 60.5 131 30.5
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 1.2e-06 59.7 172 26.2
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.1e-06 58.9 144 27.1
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 3.5e-06 58.2 111 30.6
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 4.6e-06 57.8 556 21.9
CDE12G0814 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 7.9e-06 57.0 143 30.1
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 7.9e-06 57.0 347 22.8


User provided reference genes

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