Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 0.0e+00 2408.6 1381 100.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 0.0e+00 1683.3 1458 70.9
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 0.0e+00 1496.9 1217 69.2
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.1e-278 964.1 1209 52.3
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.6e-205 721.1 1477 41.2
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 7.1e-193 679.1 1460 40.3
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 5.3e-188 662.9 1472 41.0
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.4e-174 615.9 1524 36.0
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.0e-171 607.8 841 46.4
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 3.8e-170 603.6 1583 38.4
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.6e-160 571.6 1219 37.7
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 6.1e-160 569.7 1702 34.5
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.3e-146 525.4 1209 36.0
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.1e-140 503.8 1160 35.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 2.0e-139 501.5 1613 34.3
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.9e-139 500.0 1547 32.8
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.0e-135 489.2 1155 34.3
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.0e-135 489.2 1557 34.9
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.0e-135 489.2 1217 32.9
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.8e-135 486.5 1151 34.1
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 8.9e-135 486.1 1095 35.3
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 2.2e-133 481.5 1424 32.7
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 8.1e-128 463.0 845 37.6
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 2.2e-125 454.9 1092 34.1
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 8.3e-125 453.0 1483 37.0
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.4e-124 451.4 891 36.9
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.3e-122 445.7 1491 33.6
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.4e-119 435.6 1546 34.6
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 9.9e-118 429.5 1505 34.1
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.7e-117 427.6 1493 32.0
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 5.4e-116 423.7 1501 31.9
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 3.5e-115 421.0 1481 34.0
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.7e-114 418.7 1056 33.9
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 8.6e-114 416.4 1498 32.2
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.9e-113 415.2 876 36.4
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 8.1e-112 409.8 1584 33.3
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 4.4e-110 404.1 713 40.5
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 2.2e-109 401.7 916 36.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.4e-109 400.2 1490 34.0
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.7e-106 392.1 1539 33.1
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 8.7e-106 389.8 1516 30.4
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 3.3e-105 387.9 1484 31.3
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.6e-105 387.1 1538 32.8
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 2.1e-104 385.2 1547 29.2
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 8.1e-104 383.3 1574 29.4
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.4e-103 381.7 1455 32.9
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 4.0e-103 380.9 1556 32.5
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.6e-102 378.3 1545 32.5
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 5.8e-102 377.1 1532 31.9
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 4.9e-101 374.0 1443 30.3
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 3.5e-99 367.9 1543 33.5
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 7.9e-99 366.7 1442 31.6
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 1.3e-98 365.9 1139 31.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.5e-97 361.7 1072 30.9
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.5e-97 361.7 846 35.3
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 4.3e-97 360.9 1465 30.3
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 4.3e-97 360.9 999 32.4
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.6e-96 359.0 1494 33.6
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 6.2e-96 357.1 1095 31.0
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 8.1e-96 356.7 1099 31.1
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 7.6e-94 350.1 945 32.2
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.7e-93 349.0 1465 28.8
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.4e-92 345.9 1555 29.8
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 7.4e-89 333.6 1192 31.5
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 2.1e-88 332.0 1093 30.3
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.6e-86 325.1 1444 32.1
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 6.0e-83 313.9 1047 29.9
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 4.8e-80 304.3 1403 29.0
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 2.4e-79 302.0 1392 30.3
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.7e-77 295.8 1048 28.5
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.9e-77 295.0 1474 28.8
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 2.9e-77 295.0 1422 28.2
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.5e-77 293.9 1092 31.2
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 6.5e-77 293.9 1486 30.0
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 2.5e-76 292.0 1060 29.1
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 7.2e-76 290.4 1103 27.8
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 6.1e-75 287.3 1434 29.6
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 6.7e-74 283.9 1131 29.7
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 1.1e-73 283.1 1402 28.2
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 4.8e-72 277.7 1060 27.9
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 8.2e-72 276.9 1407 29.5
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.1e-71 276.6 1348 30.4
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.2e-70 273.1 1599 27.8
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.3e-69 269.6 1400 29.1
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 8.5e-69 266.9 1416 28.0
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.1e-68 266.5 1420 28.9
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 1.9e-68 265.8 1181 26.6
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.6e-67 262.7 969 28.6
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.0e-66 260.0 1065 27.9
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.4e-66 259.6 1409 26.1
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.3e-66 258.8 1151 26.9
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 6.7e-66 257.3 1155 26.7
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 2.5e-65 255.4 1432 27.0
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-64 253.1 1398 27.0
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.2e-64 252.3 825 29.3
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 9.1e-63 246.9 1415 26.7
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 1.7e-61 242.7 802 28.9
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.3e-53 216.5 1109 25.2
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 1.6e-51 209.5 245 52.2
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 3.6e-51 208.4 1388 25.4
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 7.5e-49 200.7 775 29.2
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 2.8e-48 198.7 771 27.2
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 3.7e-48 198.4 1040 25.8
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 3.5e-46 191.8 773 27.3
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-45 189.9 1368 23.6
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 8.8e-42 177.2 714 26.6
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 8.8e-42 177.2 550 41.8
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 3.4e-41 175.3 553 29.3
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 8.3e-40 170.6 382 33.0
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.8e-39 169.5 461 31.2
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.8e-39 169.5 461 31.2
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 3.1e-39 168.7 1115 23.7
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.6e-38 166.4 461 31.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 6.5e-37 161.0 155 58.1
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 6.1e-35 154.5 873 32.5
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 4.0e-34 151.8 1215 26.2
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 6.8e-34 151.0 148 56.1
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.2e-30 140.2 119 66.4
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.2e-27 130.2 422 30.6
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 2.1e-27 129.4 294 33.0
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 3.0e-26 125.6 961 23.1
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 7.5e-25 120.9 392 27.3
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 7.5e-25 120.9 1039 24.0
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 3.7e-24 118.6 299 31.1
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-22 113.6 328 30.2
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.2e-22 113.6 328 29.3
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 3.0e-21 109.0 331 28.7
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 4.7e-19 101.7 146 43.2
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.3e-16 93.6 199 34.7
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 4.1e-15 88.6 321 31.5
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 5.4e-15 88.2 111 43.2
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.6e-14 86.7 108 45.4
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.5e-12 80.1 139 36.0
CSS0038484 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 5.6e-12 78.2 109 47.7
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 7.3e-12 77.8 154 34.4
CSS0031745 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 3.6e-11 75.5 61 68.9
CSS0045402 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 3.6e-11 75.5 61 68.9
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 1.1e-10 73.9 147 34.7
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.1e-10 73.9 145 36.6
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 2.3e-10 72.8 291 26.1
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 5.8e-09 68.2 422 41.5
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.2e-08 66.2 164 37.8
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 4.9e-08 65.1 486 28.4
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 4.9e-08 65.1 126 34.9
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 2.4e-07 62.8 79 46.8
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 7.1e-07 61.2 207 28.5
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 4.6e-06 58.5 79 44.3


User provided reference genes

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