Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.1e-166 589.0 296 100.0
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 9.4e-135 483.8 271 90.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 5.0e-128 461.5 296 80.4
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 4.7e-118 428.3 270 78.5
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.9e-115 419.1 271 77.1
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 4.6e-113 411.8 258 81.4
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 5.8e-108 394.8 270 74.8
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 3.9e-104 382.1 274 71.5
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 2.1e-102 376.3 273 72.5
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 6.8e-101 371.3 270 70.0
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.2e-100 370.5 270 71.1
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 3.8e-99 365.5 270 68.5
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.1e-98 364.0 247 73.7
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.4e-98 362.8 270 69.3
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.4e-98 361.7 241 75.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 9.2e-98 360.9 262 69.1
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.5e-97 359.0 239 74.9
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.0e-96 357.5 272 67.3
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.3e-96 357.1 254 71.7
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.1e-95 354.0 240 72.9
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.5e-95 352.8 249 71.5
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 2.5e-95 352.8 270 66.7
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 4.3e-95 352.1 269 66.5
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.3e-95 352.1 270 66.3
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.2e-94 350.5 236 73.3
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 4.7e-94 348.6 239 71.5
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.8e-93 346.7 270 65.2
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 2.4e-93 346.3 238 71.4
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.4e-93 346.3 244 70.1
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 3.1e-93 345.9 270 65.9
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 5.2e-93 345.1 235 76.2
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 8.9e-93 344.4 262 66.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 9.9e-92 340.9 264 64.4
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.1e-90 337.4 262 65.3
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 3.2e-90 335.9 242 69.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 9.3e-90 334.3 261 66.7
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.6e-89 333.6 248 68.1
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.6e-89 333.6 238 68.9
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 7.8e-89 331.3 249 65.9
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.0e-88 330.9 270 64.1
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-88 329.3 270 63.7
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 6.6e-88 328.2 232 72.4
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 3.3e-87 325.9 273 63.7
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 4.3e-87 325.5 242 68.2
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.3e-87 325.5 242 68.2
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 5.6e-87 325.1 231 68.8
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.1e-86 323.2 262 63.4
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 2.1e-86 323.2 292 60.6
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 6.2e-86 321.6 271 62.4
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 8.1e-86 321.2 232 67.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 8.1e-86 321.2 262 64.5
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 8.1e-86 321.2 256 63.7
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.4e-85 320.5 249 65.1
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.4e-85 319.7 258 66.3
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 5.3e-85 318.5 238 66.4
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 5.3e-85 318.5 235 64.7
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 9.0e-85 317.8 238 66.0
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 9.0e-85 317.8 287 59.9
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.2e-84 317.4 235 64.7
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.2e-83 313.2 249 63.5
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.8e-83 312.4 244 65.2
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.4e-82 310.5 237 62.4
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.2e-82 309.3 244 64.8
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 7.1e-82 308.1 257 62.6
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 3.5e-81 305.8 252 61.5
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.6e-81 305.4 223 65.9
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 6.0e-81 305.1 241 63.5
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.5e-79 300.4 241 62.7
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.9e-79 300.1 253 59.3
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.9e-79 300.1 241 62.7
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 4.3e-79 298.9 241 62.2
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 4.3e-79 298.9 241 62.2
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 4.3e-79 298.9 206 75.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 5.6e-79 298.5 242 62.8
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 7.4e-79 298.1 241 63.1
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 7.4e-79 298.1 224 67.9
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 9.6e-79 297.7 241 62.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-78 296.6 207 72.5
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.8e-78 296.2 239 63.2
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.1e-77 294.3 241 63.5
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.4e-77 293.9 241 62.2
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.4e-77 293.9 241 62.2
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 4.0e-77 292.4 239 62.3
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.4e-74 283.9 198 73.7
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 6.0e-73 278.5 192 75.0
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 5.1e-72 275.4 198 71.7
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.5e-71 273.9 187 74.3
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.3e-71 272.7 190 70.5
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 4.8e-70 268.9 286 51.7
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.4e-69 266.5 245 57.6
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 4.5e-68 262.3 219 61.6
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 4.9e-67 258.8 228 58.8
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 4.9e-67 258.8 261 53.3
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-65 254.2 188 68.6
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 4.6e-65 252.3 229 56.3
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.6e-65 252.3 230 54.3
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.3e-64 250.0 240 55.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.3e-63 245.7 202 61.4
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-62 243.0 180 68.9
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.3e-56 224.2 233 53.2
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 8.7e-56 221.5 124 87.1
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-51 208.0 232 51.7
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 2.9e-51 206.5 160 66.2
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-48 197.6 236 52.1
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 6.9e-45 185.3 122 73.0
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.8e-43 179.5 145 62.1
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.1e-39 167.9 218 41.7
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-37 161.4 174 50.6
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.7e-35 154.1 117 62.4
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.9e-34 150.6 125 63.2
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.4e-34 148.3 139 56.1
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.5e-31 141.0 116 62.9
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.7e-31 138.3 254 39.0
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-25 119.0 103 58.3
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.6e-23 113.6 210 41.0
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.4e-23 112.8 112 55.4
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.7e-22 109.8 86 60.5
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-20 104.4 71 76.1
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.0e-20 104.0 74 68.9
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-20 103.6 117 48.7
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-18 98.2 127 47.2
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.0e-16 91.7 98 50.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.2e-15 88.2 117 41.9
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.5e-15 87.8 91 50.5
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.6e-15 87.0 71 57.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.5e-15 85.5 99 49.5
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.7e-14 83.2 88 48.9
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 8.3e-14 82.0 82 46.3
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.8e-12 75.5 84 45.2
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.3e-11 74.7 66 53.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.8e-08 64.3 52 69.2
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-07 61.2 141 29.8


User provided reference genes

Program Settings