Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 6.6e-128 460.7 227 100.0
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 6.4e-83 311.2 191 81.7
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 6.4e-83 311.2 191 81.7
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 2.7e-81 305.8 190 81.6
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 3.0e-80 302.4 190 80.5
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 8.7e-80 300.8 189 78.3
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 6.2e-78 294.7 174 83.3
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 8.1e-78 294.3 190 78.9
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 5.8e-76 288.1 182 79.1
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 5.8e-76 288.1 192 78.6
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 2.9e-75 285.8 190 75.8
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 3.8e-75 285.4 189 74.1
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 6.5e-75 284.6 182 75.3
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 6.5e-75 284.6 190 75.3
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 6.5e-75 284.6 195 73.8
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 1.1e-74 283.9 174 79.3
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 1.1e-74 283.9 174 79.3
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 1.9e-74 283.1 174 81.0
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 1.9e-74 283.1 174 81.0
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 7.1e-74 281.2 190 75.8
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 9.3e-74 280.8 190 75.8
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 1.2e-73 280.4 207 71.5
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 2.1e-73 279.6 184 76.6
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 2.1e-73 279.6 174 77.6
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.1e-73 279.6 223 66.4
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 2.7e-73 279.3 189 74.1
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 6.0e-73 278.1 189 74.1
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 7.9e-73 277.7 184 72.8
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 7.9e-73 277.7 174 78.2
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 1.8e-72 276.6 203 69.5
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 5.1e-72 275.0 174 78.7
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 5.1e-72 275.0 181 77.9
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 8.7e-72 274.2 175 78.3
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 1.1e-71 273.9 174 77.6
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 1.5e-71 273.5 189 73.0
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 1.9e-71 273.1 174 79.3
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 4.3e-71 271.9 173 78.6
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 4.3e-71 271.9 190 74.2
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 4.3e-71 271.9 193 69.4
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 7.4e-71 271.2 174 75.3
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 1.3e-70 270.4 175 76.0
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 2.8e-70 269.2 174 74.7
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 3.7e-70 268.9 174 75.3
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 4.8e-70 268.5 189 72.5
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 4.8e-70 268.5 161 81.4
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 6.2e-70 268.1 174 77.0
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 8.2e-70 267.7 161 80.7
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 8.2e-70 267.7 184 73.4
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 1.1e-69 267.3 186 72.0
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 1.4e-69 266.9 174 73.6
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 2.4e-69 266.2 189 71.4
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 3.1e-69 265.8 154 81.8
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 3.1e-69 265.8 154 81.8
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 3.1e-69 265.8 174 74.1
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 4.1e-69 265.4 161 80.7
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 4.1e-69 265.4 161 80.1
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 4.1e-69 265.4 174 77.6
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 5.3e-69 265.0 228 61.8
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 9.0e-69 264.2 185 73.5
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 1.2e-68 263.8 184 70.7
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 1.2e-68 263.8 228 61.8
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 2.0e-68 263.1 188 72.9
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 2.0e-68 263.1 174 73.6
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 2.0e-68 263.1 175 74.9
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 2.0e-68 263.1 223 63.2
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 3.4e-68 262.3 155 80.6
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 4.5e-68 261.9 174 73.0
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 4.5e-68 261.9 174 73.6
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 5.8e-68 261.5 161 78.3
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 1.3e-67 260.4 189 69.3
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 1.7e-67 260.0 174 74.1
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 2.9e-67 259.2 175 74.3
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 6.5e-67 258.1 190 67.4
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 1.4e-66 256.9 190 70.0
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 1.9e-66 256.5 190 70.0
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 4.2e-66 255.4 194 67.5
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 3.5e-65 252.3 190 68.9
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 4.6e-65 251.9 160 78.1
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 6.1e-65 251.5 192 68.2
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 6.1e-65 251.5 184 71.7
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 7.9e-65 251.1 174 73.0
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 7.9e-65 251.1 190 67.9
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 7.9e-65 251.1 190 67.9
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 1.0e-64 250.8 174 71.8
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 1.0e-64 250.8 175 73.1
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.3e-64 250.4 226 61.9
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 1.3e-64 250.4 155 78.7
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 2.3e-64 249.6 190 67.4
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 3.0e-64 249.2 160 76.9
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 3.0e-64 249.2 190 67.4
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 5.1e-64 248.4 174 73.0
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 5.1e-64 248.4 226 61.5
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 5.1e-64 248.4 151 80.8
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 5.1e-64 248.4 189 68.3
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 6.7e-64 248.1 155 79.4
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 6.7e-64 248.1 171 73.7
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 8.7e-64 247.7 192 67.7
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 1.1e-63 247.3 183 69.4
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 1.1e-63 247.3 155 80.6
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.9e-63 246.5 189 68.3
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.9e-63 246.5 174 71.3
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 2.5e-63 246.1 155 78.1
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 7.4e-63 244.6 155 78.7
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 1.6e-62 243.4 155 75.5
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 3.7e-62 242.3 173 68.8
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.8e-62 241.9 189 67.7
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 1.1e-61 240.7 156 74.4
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 3.4e-60 235.7 190 66.8
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 4.5e-60 235.3 189 67.7
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 1.3e-59 233.8 175 69.1
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 5.5e-58 228.4 155 73.5
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 5.5e-58 228.4 181 60.2
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 6.1e-57 224.9 151 72.2
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 1.4e-56 223.8 249 51.8
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.4e-56 223.8 285 47.7
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 2.3e-56 223.0 151 74.2
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 2.3e-56 223.0 134 79.9
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 1.3e-54 217.2 164 68.3
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 4.7e-49 198.7 123 78.0
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.7e-47 191.0 118 79.7
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 4.8e-46 188.7 151 60.3
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.1e-45 185.7 118 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 1.5e-44 183.7 159 55.3
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 4.5e-44 182.2 116 78.4
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 2.9e-43 179.5 196 48.5
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.5e-42 177.2 114 73.7
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.2e-40 168.7 118 72.0
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 1.1e-39 167.5 169 49.7
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 3.7e-38 162.5 135 64.4
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 2.4e-37 159.8 153 56.2
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 2.6e-36 156.4 153 54.9
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 8.5e-35 151.4 157 47.1
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.9e-34 150.2 181 48.6
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 5.5e-34 148.7 118 64.4
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.0e-32 144.4 116 63.8
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 2.6e-31 139.8 152 46.1
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 3.4e-31 139.4 116 62.1
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 1.1e-29 134.4 108 64.8
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.4e-29 134.0 80 80.0
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 1.2e-28 131.0 125 55.2
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 5.9e-20 102.1 62 82.3
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 1.0e-19 101.3 150 40.7
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 4.3e-18 95.9 82 64.6
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.3e-16 90.1 61 75.4
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 3.0e-16 89.7 62 72.6
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 8.9e-16 88.2 62 71.0
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 4.4e-15 85.9 66 63.6
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 4.4e-15 85.9 66 63.6
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.2e-14 83.6 59 72.9
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 2.4e-13 80.1 143 36.4
PRCOL_00005540 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 3.3e-10 69.7 140 30.7
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 6.8e-08 62.0 145 32.4
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 1.5e-07 60.8 145 33.1
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 1.5e-07 60.8 128 30.5
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 2.0e-07 60.5 159 31.4
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 3.4e-07 59.7 143 30.1
Ca_29294_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 3.4e-07 59.7 127 30.7
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 4.4e-07 59.3 143 27.3
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 5.8e-07 58.9 146 29.5
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 7.5e-07 58.5 142 26.1
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 9.8e-07 58.2 146 27.4
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 9.8e-07 58.2 146 26.7
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 9.8e-07 58.2 142 25.4
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 9.8e-07 58.2 165 26.7
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 1.3e-06 57.8 146 27.4
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 1.7e-06 57.4 144 29.2
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 2.9e-06 56.6 143 26.6
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 2.9e-06 56.6 122 27.9
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.9e-06 56.6 146 26.7
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 3.7e-06 56.2 143 28.7
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 3.7e-06 56.2 165 26.7
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 4.9e-06 55.8 168 26.8
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 4.9e-06 55.8 146 28.8
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 8.3e-06 55.1 146 26.7
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 8.3e-06 55.1 145 28.3
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 8.3e-06 55.1 146 28.1
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 8.3e-06 55.1 159 27.0
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 8.3e-06 55.1 145 27.6


User provided reference genes

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