Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 0.0e+00 1513.0 796 100.0
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1401.0 821 90.3
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1196.8 824 77.7
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1160.6 824 75.7
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1124.8 824 72.1
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1116.3 789 76.6
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1097.4 825 71.3
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1088.2 825 70.2
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 821 70.8
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 861 68.1
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 825 70.2
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1075.1 825 69.3
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 2.7e-309 1065.1 822 69.0
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 1.0e-308 1063.1 847 68.5
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 7.3e-307 1057.0 818 69.7
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 5.2e-305 1050.8 825 69.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 5.2e-305 1050.8 824 68.6
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.0e-304 1048.9 757 73.2
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.1e-302 1043.1 821 67.8
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 1.4e-302 1042.7 824 67.1
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.2e-302 1041.6 821 67.8
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.6e-301 1039.3 821 67.7
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 3.5e-301 1038.1 826 67.6
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 3.5e-301 1038.1 822 67.8
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 4.6e-301 1037.7 822 67.8
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 2.3e-300 1035.4 818 68.1
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 5.0e-300 1034.2 825 68.4
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.9e-299 1032.3 833 67.6
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.3e-299 1031.2 824 66.3
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 4.3e-299 1031.2 824 67.4
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 5.6e-299 1030.8 825 66.7
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.8e-297 1025.8 824 65.9
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 6.8e-297 1023.8 824 66.1
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 6.8e-297 1023.8 822 66.3
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 3.2e-294 1015.0 820 67.0
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 9.2e-294 1013.4 822 66.5
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 6.0e-293 1010.7 822 66.7
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 1.0e-292 1010.0 791 68.9
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.9e-292 1008.1 831 65.0
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.9e-291 1005.7 822 66.5
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 3.3e-291 1005.0 824 66.5
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.2e-290 1003.0 822 66.1
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 2.1e-290 1002.3 836 65.9
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.4e-289 999.6 827 64.7
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 3.1e-289 998.4 846 64.3
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 3.4e-288 995.0 825 64.2
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 5.8e-288 994.2 760 71.2
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.3e-287 993.0 827 65.3
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 6.4e-287 990.7 846 64.5
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.4e-286 989.6 825 65.2
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 1.4e-286 989.6 823 64.8
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 3.5e-285 984.9 817 65.4
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 5.1e-284 981.1 825 64.5
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.9e-283 979.2 819 64.7
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 3.3e-283 978.4 822 64.8
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 2.1e-282 975.7 821 64.6
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 3.4e-280 968.4 822 64.0
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 4.4e-280 968.0 897 60.9
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 9.9e-280 966.8 823 63.9
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 1.7e-279 966.1 825 64.2
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 6.4e-279 964.1 822 62.9
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 4.2e-278 961.4 828 63.8
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.6e-277 959.5 819 63.1
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 4.6e-277 958.0 819 63.2
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 3.0e-276 955.3 821 62.0
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.5e-275 953.0 821 62.1
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 2.5e-275 952.2 821 63.6
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.3e-275 951.8 821 61.9
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 3.3e-275 951.8 821 63.1
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 4.3e-275 951.4 821 61.9
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 7.3e-275 950.7 821 61.6
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 6.2e-274 947.6 821 63.0
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 1.1e-273 946.8 821 61.9
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 3.1e-273 945.3 821 61.8
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 5.8e-272 941.0 821 61.6
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 9.9e-272 940.3 822 60.9
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.7e-271 939.5 820 62.8
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 3.8e-271 938.3 920 58.0
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 4.9e-271 937.9 814 62.4
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 3.0e-268 928.7 833 62.2
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 1.1e-267 926.8 837 60.5
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.9e-267 926.0 820 62.3
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 2.1e-266 922.5 864 59.0
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 4.8e-266 921.4 820 62.1
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.1e-265 920.2 759 65.6
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 5.8e-264 914.4 828 61.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-260 902.9 861 58.8
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.9e-255 885.6 595 78.5
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 7.2e-238 827.8 827 54.7
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.0e-236 823.9 821 56.4
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 4.1e-233 812.0 828 54.3
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.1e-227 793.9 821 54.8
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 4.4e-227 792.0 668 63.6
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.2e-223 779.6 677 63.5
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.6e-221 773.5 866 50.7
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 6.5e-207 724.9 828 53.1
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-180 637.1 626 57.8
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.2e-160 571.2 544 58.6
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.5e-158 564.3 844 42.1
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.4e-156 557.8 407 73.2
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.5e-152 543.1 494 61.1
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 6.7e-151 538.9 785 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 8.7e-151 538.5 770 42.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 8.7e-135 485.3 834 37.8
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.8e-133 480.3 868 36.3
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 3.8e-130 469.9 780 37.4
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.6e-128 464.5 378 63.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 7.4e-126 455.7 325 73.2
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.4e-121 441.4 271 81.9
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 6.3e-93 346.3 313 60.1
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 6.6e-90 336.3 481 45.1
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.3e-87 327.8 243 74.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 6.8e-87 326.2 255 63.5
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 9.8e-86 322.4 242 64.5
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.2e-52 210.7 353 38.8
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.0e-50 204.5 164 67.7
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.6e-48 198.7 814 25.2
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 7.6e-46 189.9 220 49.1
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.1e-40 171.8 122 75.4
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 4.8e-40 170.6 118 75.4
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 3.3e-33 147.9 840 22.1
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 9.6e-33 146.4 93 75.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.6e-32 145.6 193 44.6
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.1e-32 145.2 101 73.3
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.4e-29 133.7 123 58.5
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.2e-27 129.4 206 39.3
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.0e-23 114.4 63 93.7
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 3.4e-22 111.3 71 77.5
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 3.4e-22 111.3 71 77.5
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 4.5e-22 110.9 69 76.8
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 4.1e-15 87.8 86 53.5
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.6e-14 85.1 61 72.1
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.6e-11 75.9 69 58.0
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 3.6e-11 74.7 166 35.5
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.1e-09 69.7 47 74.5
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 4.8e-08 64.3 183 29.5


User provided reference genes

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