Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 0.0e+00 2463.7 1474 100.0
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 0.0e+00 1866.3 1485 77.1
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 0.0e+00 1097.8 1670 54.1
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 2.5e-276 956.4 1612 48.8
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 2.5e-276 956.4 1612 48.8
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 2.5e-276 956.4 1612 48.8
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 2.6e-257 893.3 1592 46.5
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 4.7e-251 872.5 1131 51.1
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 9.5e-244 848.2 1067 53.7
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.4e-233 813.1 1225 52.2
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 6.9e-210 735.7 1532 43.3
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 3.3e-204 716.8 1586 43.4
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 4.2e-199 699.9 1046 47.7
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 7.9e-198 695.7 1645 41.8
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 7.6e-193 679.1 1705 42.8
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 3.5e-190 670.2 1520 42.0
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 8.7e-189 665.6 1561 41.7
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 3.6e-182 643.7 1517 44.1
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 2.3e-181 641.0 1593 42.2
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 4.7e-174 616.7 660 55.5
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 7.9e-174 615.9 1768 40.9
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 2.6e-172 610.9 1503 41.3
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 6.5e-168 596.3 1765 43.2
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.4e-165 588.6 1560 38.8
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.1e-164 585.5 1488 37.3
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 3.7e-163 580.5 1526 37.4
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 4.2e-159 567.0 1750 41.6
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 5.5e-159 566.6 1546 37.2
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 4.7e-158 563.5 1494 38.9
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 6.1e-158 563.1 1530 36.5
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 8.8e-157 559.3 1528 37.6
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.6e-153 548.5 1525 37.8
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.5e-153 547.0 1513 39.2
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 3.8e-152 543.9 1507 39.2
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 8.0e-150 536.2 1499 38.5
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 1.4e-149 535.4 1610 36.8
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 1.6e-145 521.9 1564 38.4
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.5e-145 520.4 1513 36.3
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.3e-144 518.1 1496 37.7
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 2.8e-142 511.1 1518 39.3
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.8e-141 508.4 1528 39.7
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 3.0e-141 507.7 1616 36.6
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 4.0e-141 507.3 1549 38.0
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.2e-139 501.5 1501 36.8
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 1.4e-133 482.3 1544 35.9
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.7e-131 475.3 1563 38.9
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 2.4e-130 471.5 1566 37.5
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 9.2e-130 469.5 1581 36.8
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 3.0e-128 464.5 1512 34.7
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 1.1e-127 462.6 1519 35.4
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 9.5e-127 459.5 1506 36.0
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 2.1e-126 458.4 1504 34.6
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.2e-125 453.8 1566 37.3
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 1.9e-122 445.3 1528 38.4
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 2.4e-122 444.9 1335 33.1
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 2.7e-121 441.4 1542 36.5
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 5.1e-120 437.2 1535 33.4
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.1e-119 436.0 1577 33.4
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 6.8e-117 426.8 1533 37.8
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 1.5e-116 425.6 1523 36.6
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 5.8e-116 423.7 1566 36.1
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 3.7e-115 421.0 1550 32.1
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 6.4e-115 420.2 1520 33.2
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 2.4e-114 418.3 1527 37.5
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 4.6e-113 414.1 1534 38.3
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 4.0e-109 401.0 1178 37.2
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 3.8e-107 394.4 1543 39.0
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 1.9e-106 392.1 1537 34.7
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 2.4e-106 391.7 1509 34.8
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 6.0e-105 387.1 1521 35.0
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 2.2e-99 368.6 1543 33.6
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 4.2e-98 364.4 1513 34.9
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 6.0e-97 360.5 1577 32.3
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 6.6e-96 357.1 1301 34.9
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 1.9e-95 355.5 1569 36.8
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.5e-92 345.9 1179 34.2
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 4.6e-89 334.3 731 45.4
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 3.3e-87 328.2 1512 33.9
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.3e-86 326.2 1704 33.7
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.1e-86 325.5 1527 36.5
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 2.4e-85 322.0 1563 33.2
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 4.0e-85 321.2 252 66.3
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 1.3e-83 316.2 1540 36.9
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 5.5e-82 310.8 1221 32.2
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 5.5e-82 310.8 1069 34.8
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 1.0e-80 306.6 1485 29.0
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 3.0e-80 305.1 1472 31.0
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.1e-78 298.9 275 64.0
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 1.8e-77 295.8 1093 32.5
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.5e-76 292.7 863 34.0
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 4.5e-76 291.2 689 48.5
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 2.4e-69 268.9 162 75.9
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 5.9e-68 264.2 191 68.6
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 7.4e-63 247.3 140 78.6
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 1.4e-56 226.5 396 45.5
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 1.8e-53 216.1 1669 31.0
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 5.3e-53 214.5 795 35.0
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 9.4e-50 203.8 1054 32.4
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 2.1e-49 202.6 141 63.8
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 3.6e-49 201.8 790 32.5
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.4e-48 199.9 115 80.9
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 6.7e-48 197.6 1084 29.5
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.5e-47 196.4 444 45.3
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.7e-46 193.0 149 60.4
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 3.1e-45 188.7 108 73.1
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 8.5e-43 180.6 706 31.2
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 9.4e-42 177.2 168 58.9
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.3e-40 172.6 712 31.5
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 5.7e-39 167.9 157 51.0
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 8.5e-35 154.1 181 48.6
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 1.1e-34 153.7 157 49.7
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 3.2e-34 152.1 105 62.9
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 1.6e-33 149.8 510 31.4
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.2e-32 144.8 72 86.1
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.2e-32 144.8 72 86.1
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 2.8e-30 139.0 713 34.2
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 4.5e-28 131.7 768 30.9
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.2e-25 123.6 564 29.4
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 1.8e-21 109.8 91 60.4
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.2e-21 109.0 98 57.1
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 2.3e-19 102.8 101 53.5
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 6.8e-16 91.3 131 35.1
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-15 90.1 136 30.9
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 5.8e-15 88.2 114 37.7
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.3e-14 87.0 115 35.7
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.7e-14 86.7 333 29.4
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 6.4e-14 84.7 140 26.4
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 1.4e-13 83.6 218 34.9
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 1.9e-13 83.2 227 34.4
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 2.4e-13 82.8 114 34.2
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 7.0e-13 81.3 155 37.4
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 7.8e-12 77.8 80 51.2
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 3.0e-11 75.9 985 31.7
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 4.0e-08 65.5 43 67.4
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 1.7e-06 60.1 84 38.1


User provided reference genes

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