Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 3.1e-122 441.8 222 100.0
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 3.1e-74 282.3 220 69.5
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 4.1e-66 255.4 220 63.2
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 4.1e-66 255.4 220 63.2
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 7.7e-65 251.1 213 62.0
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 3.2e-63 245.7 210 60.5
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 8.0e-62 241.1 209 59.3
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 1.4e-61 240.4 219 58.9
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 4.0e-61 238.8 219 58.0
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 4.0e-61 238.8 220 58.6
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 6.8e-61 238.0 208 58.2
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 2.2e-59 233.0 220 55.5
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 4.1e-58 228.8 203 57.1
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 7.0e-58 228.0 214 55.1
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 9.2e-58 227.6 212 54.7
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 9.2e-58 227.6 214 54.7
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 9.2e-58 227.6 206 57.8
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 2.0e-57 226.5 212 55.2
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 2.7e-57 226.1 207 57.5
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 3.5e-57 225.7 218 55.0
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 5.9e-57 224.9 219 54.3
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 5.9e-57 224.9 216 53.7
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 5.9e-57 224.9 216 53.7
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 7.7e-57 224.6 212 55.7
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.3e-56 223.8 216 55.1
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.3e-56 223.8 216 55.1
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 1.7e-56 223.4 216 54.2
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 2.3e-56 223.0 207 57.0
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 2.9e-56 222.6 219 53.9
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 2.9e-56 222.6 212 55.2
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 3.8e-56 222.2 212 56.1
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 3.8e-56 222.2 212 54.2
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.0e-56 221.9 215 55.3
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 5.0e-56 221.9 215 54.4
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 6.6e-56 221.5 212 53.8
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 8.6e-56 221.1 219 54.3
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.1e-55 220.7 215 55.8
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-55 220.7 215 54.9
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.5e-55 220.3 219 54.8
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.9e-55 219.9 212 55.7
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 1.9e-55 219.9 217 53.5
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 2.5e-55 219.5 219 52.1
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 3.3e-55 219.2 222 53.2
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 5.6e-55 218.4 219 52.1
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 5.6e-55 218.4 219 52.1
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 5.6e-55 218.4 219 52.1
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 5.6e-55 218.4 212 52.4
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 5.6e-55 218.4 221 53.4
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 5.6e-55 218.4 205 56.1
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 7.3e-55 218.0 209 53.1
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 9.5e-55 217.6 211 55.0
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 9.5e-55 217.6 215 53.5
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 9.5e-55 217.6 215 53.5
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 1.2e-54 217.2 212 51.9
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.2e-54 217.2 212 51.9
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.2e-54 217.2 212 51.9
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 1.6e-54 216.9 199 56.3
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 2.1e-54 216.5 213 54.0
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 2.1e-54 216.5 214 52.8
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 2.8e-54 216.1 217 51.6
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 2.8e-54 216.1 220 54.1
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 2.8e-54 216.1 219 52.1
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 4.7e-54 215.3 212 52.4
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 6.1e-54 214.9 207 52.2
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 6.1e-54 214.9 207 52.2
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 6.1e-54 214.9 205 55.1
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 8.0e-54 214.5 215 52.1
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 1.0e-53 214.2 215 52.1
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 1.0e-53 214.2 213 54.9
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 1.0e-53 214.2 205 54.6
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 3.0e-53 212.6 219 52.5
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 3.0e-53 212.6 205 54.1
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 5.2e-53 211.8 218 50.5
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 1.5e-52 210.3 220 52.3
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 1.5e-52 210.3 219 52.5
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 4.4e-52 208.8 207 52.7
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 4.4e-52 208.8 205 53.2
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 5.7e-52 208.4 212 50.5
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.7e-51 206.8 219 50.7
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 1.7e-51 206.8 212 51.9
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.9e-51 206.1 189 54.0
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 3.7e-51 205.7 207 52.2
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 3.7e-51 205.7 224 50.4
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 3.7e-51 205.7 205 49.8
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 8.3e-51 204.5 220 52.3
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 8.3e-51 204.5 216 50.0
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 1.8e-50 203.4 221 50.2
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 1.8e-50 203.4 207 53.1
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.4e-50 203.0 207 53.1
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.4e-50 203.0 219 53.4
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 3.2e-50 202.6 217 50.7
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 3.2e-50 202.6 203 52.2
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 4.1e-50 202.2 219 49.8
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 5.4e-50 201.8 212 50.0
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 9.2e-50 201.1 197 53.8
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 1.6e-49 200.3 114 81.6
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 2.0e-49 199.9 203 52.2
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 2.0e-49 199.9 211 49.8
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 2.7e-49 199.5 221 48.4
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 3.5e-49 199.1 211 49.3
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 5.9e-49 198.4 212 49.1
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 8.6e-48 194.5 190 53.2
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.5e-47 193.7 211 47.9
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 5.8e-44 181.8 184 52.7
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 6.4e-43 178.3 203 49.3
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 1.4e-42 177.2 206 45.1
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.4e-42 176.4 185 49.7
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 1.2e-41 174.1 181 52.5
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 1.2e-41 174.1 193 51.8
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 1.0e-40 171.0 211 45.5
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 2.3e-40 169.9 106 73.6
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 3.0e-40 169.5 192 50.5
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 3.3e-39 166.0 187 48.7
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 3.3e-39 166.0 187 48.7
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 4.3e-39 165.6 186 50.5
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 3.6e-38 162.5 188 47.9
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 6.2e-38 161.8 206 47.1
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 1.1e-37 161.0 191 48.7
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.8e-37 160.2 174 50.6
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 1.8e-37 160.2 193 49.7
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 4.0e-37 159.1 191 47.6
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 2.0e-36 156.8 193 48.2
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 2.2e-35 153.3 210 41.9
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 1.1e-34 151.0 80 86.2
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.9e-34 150.2 188 47.9
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 6.0e-33 145.2 87 74.7
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 6.0e-33 145.2 96 68.8
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 1.0e-32 144.4 179 45.3
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 2.3e-32 143.3 96 67.7
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 5.1e-32 142.1 192 46.4
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 5.1e-32 142.1 192 46.4
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 3.1e-29 132.9 95 66.3
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 6.4e-27 125.2 209 34.4
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 2.4e-26 123.2 167 41.9
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 3.0e-24 116.3 197 40.1
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 2.5e-23 113.2 64 81.2
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 8.1e-22 108.2 199 34.7
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 4.0e-21 105.9 157 42.0
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.2e-20 104.4 89 59.6
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 7.6e-20 101.7 125 40.8
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 1.4e-18 97.4 127 40.9
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 1.6e-17 94.0 133 36.8
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 2.1e-14 83.6 135 40.0
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 2.2e-11 73.6 47 76.6
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.2e-09 67.8 53 67.9
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 2.3e-08 63.5 40 72.5
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 5.1e-08 62.4 56 55.4
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 5.1e-08 62.4 88 42.0
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 3.3e-07 59.7 116 34.5
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 9.6e-07 58.2 27 92.6
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 1.3e-06 57.8 69 42.0
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 1.3e-06 57.8 69 43.5
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 2.1e-06 57.0 30 83.3
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 2.8e-06 56.6 27 88.9
AUR62015937 Chenopodium quinoa HOM05D004024 ORTHO05D004639 2.8e-06 56.6 121 35.5
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 4.8e-06 55.8 102 32.4
arahy.Tifrunner.gnm1.ann1.94PN3C Arachis hypogaea HOM05D004936 ORTHO05D005977 6.2e-06 55.5 27 88.9
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 6.2e-06 55.5 116 33.6
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 8.1e-06 55.1 27 85.2
Psat0s4319g0040 Pisum sativum HOM05D004024 ORTHO05D004639 8.1e-06 55.1 67 38.8


User provided reference genes

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