Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 3.5e-220 768.1 408 100.0
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 6.6e-203 710.7 409 93.2
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 2.1e-185 652.5 417 86.3
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 3.2e-181 638.6 403 85.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.9e-179 631.7 387 86.8
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 8.3e-174 614.0 378 86.2
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.4e-173 613.2 379 85.8
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 3.2e-173 612.1 400 81.8
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.0e-171 607.1 378 85.4
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 3.9e-171 605.1 405 81.5
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 9.5e-170 600.5 407 80.1
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 6.2e-169 597.8 383 84.3
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 4.0e-168 595.1 398 82.2
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.2e-167 593.6 386 81.1
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.6e-167 592.4 398 81.2
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 3.4e-167 592.0 398 80.2
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.3e-166 590.1 346 89.0
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.7e-166 589.7 381 81.6
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.7e-166 589.7 346 88.7
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.8e-166 588.6 398 79.6
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 6.4e-166 587.8 379 80.7
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.4e-165 586.6 360 86.9
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.4e-165 585.9 409 79.2
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.4e-165 585.9 383 82.0
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 4.2e-165 585.1 346 88.2
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.2e-164 583.6 403 79.4
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.1e-164 582.8 382 81.2
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 4.6e-164 581.6 394 79.9
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 4.6e-164 581.6 399 80.2
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 4.6e-164 581.6 385 81.8
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 6.0e-164 581.3 394 80.7
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 7.8e-164 580.9 384 82.6
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.0e-163 580.5 351 87.5
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 3.0e-163 578.9 397 78.6
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 3.9e-163 578.6 342 89.2
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 3.9e-163 578.6 379 81.8
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.9e-163 578.6 339 89.4
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 5.1e-163 578.2 412 76.7
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 6.6e-163 577.8 360 85.8
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 6.6e-163 577.8 377 81.2
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.1e-162 577.0 384 81.2
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.5e-162 576.6 339 89.1
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.5e-162 576.6 328 92.4
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 2.5e-162 575.9 383 80.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 2.5e-162 575.9 380 80.8
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 5.6e-162 574.7 391 80.1
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.6e-161 573.2 388 80.4
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 2.1e-161 572.8 391 80.3
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.1e-161 572.8 377 81.7
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.6e-161 572.0 339 88.5
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 3.6e-161 572.0 381 81.6
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 6.2e-161 571.2 397 79.6
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.1e-160 570.5 333 88.3
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.4e-160 570.1 396 79.3
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.8e-160 569.7 396 76.8
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.8e-160 569.7 382 78.3
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 3.1e-160 568.9 391 79.8
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 6.9e-160 567.8 386 77.2
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 9.0e-160 567.4 380 81.3
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.2e-159 567.0 378 81.2
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.2e-159 567.0 380 81.3
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.5e-159 566.6 408 76.5
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 2.0e-159 566.2 377 78.5
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.6e-159 565.8 420 74.3
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.6e-159 565.8 420 74.3
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 3.4e-159 565.5 383 80.7
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.3e-158 563.5 381 78.2
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.2e-158 562.8 399 76.2
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.2e-158 562.8 399 76.2
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.2e-158 562.8 398 76.4
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 2.9e-158 562.4 384 76.8
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 3.8e-158 562.0 378 79.4
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 4.9e-158 561.6 347 85.0
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 4.9e-158 561.6 347 85.0
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 6.4e-158 561.2 381 77.7
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.9e-157 559.7 378 80.4
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.4e-157 559.3 364 81.3
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.4e-157 559.3 383 77.0
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.2e-157 558.9 382 78.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 5.4e-157 558.1 389 77.6
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 9.3e-157 557.4 394 76.9
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.1e-156 556.2 403 74.7
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 6.0e-156 554.7 393 77.4
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.3e-155 552.7 410 74.4
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-154 550.4 377 77.7
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 1.1e-154 550.4 385 76.4
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.1e-154 550.4 377 77.7
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.5e-154 550.1 379 79.2
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 3.3e-154 548.9 399 75.9
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 3.3e-154 548.9 347 82.7
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 4.3e-154 548.5 381 76.6
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 4.3e-154 548.5 392 75.8
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.3e-153 547.0 378 78.3
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.3e-153 547.0 392 75.8
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.3e-153 547.0 397 75.1
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.6e-153 546.6 337 84.0
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 2.1e-153 546.2 377 76.9
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 2.8e-153 545.8 335 84.8
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 6.2e-153 544.7 378 77.8
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.4e-152 543.5 404 74.8
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.4e-152 542.7 398 74.9
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 5.3e-152 541.6 396 73.7
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 6.9e-152 541.2 335 84.5
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-151 540.4 399 74.2
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 7.6e-151 537.7 418 72.7
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 2.9e-150 535.8 334 83.2
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.9e-149 533.1 371 78.2
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 8.7e-147 524.2 297 91.2
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.1e-145 519.6 326 81.6
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.4e-144 516.2 297 89.2
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 9.0e-144 514.2 307 86.0
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 5.8e-143 511.5 297 89.2
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 7.6e-143 511.1 331 79.8
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.0e-139 499.2 380 72.4
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 5.1e-139 498.4 377 72.9
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.1e-138 497.3 346 76.0
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 1.3e-137 493.8 331 78.9
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 3.4e-135 485.7 364 70.9
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 8.4e-134 481.1 390 71.3
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 7.1e-133 478.0 313 79.6
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 1.5e-130 470.3 336 75.3
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.5e-130 470.3 378 71.4
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 7.4e-130 468.0 331 75.8
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 2.4e-128 463.0 425 63.5
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.0e-126 457.6 318 74.5
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.5e-119 433.7 246 93.5
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 5.5e-117 425.2 272 84.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 3.7e-113 412.5 328 69.5
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 8.2e-113 411.4 328 69.2
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 3.0e-107 392.9 325 63.7
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 8.2e-105 384.8 279 69.5
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 2.2e-97 360.1 308 61.4
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.2e-93 346.3 198 92.4
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.8e-84 316.6 378 54.0
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-79 300.8 198 80.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.6e-79 300.8 198 80.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.3e-75 287.0 165 88.5
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 7.1e-64 248.8 294 46.6
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.6e-58 230.3 130 90.8
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 3.4e-58 229.9 293 45.4
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.0e-54 216.9 154 77.9
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 3.9e-54 216.5 330 42.7
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.3e-49 201.4 199 62.8
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.4e-48 197.2 178 64.0
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 3.9e-38 163.3 132 64.4
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.9e-37 161.0 149 60.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.3e-37 159.1 213 48.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 7.9e-31 139.0 127 57.5
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 3.0e-30 137.1 80 87.5
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.5e-18 98.2 75 73.3
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 7.9e-15 85.9 48 91.7
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 5.1e-14 83.2 60 73.3
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 8.2e-12 75.9 85 52.9
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 6.9e-11 72.8 62 66.1
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 2.6e-10 70.9 42 71.4
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.3e-09 68.6 42 83.3
ATR0037G072 Amborella trichopoda HOM05D004740 ORTHO05D066598 8.8e-06 55.8 93 41.9


User provided reference genes

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