Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 2.8e-266 921.4 472 100.0
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 2.1e-184 649.4 519 67.8
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 4.3e-166 588.6 436 67.7
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 5.5e-153 545.0 496 59.3
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 3.6e-152 542.3 496 58.3
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 8.0e-152 541.2 496 58.1
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 2.0e-150 536.6 495 57.2
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 1.2e-147 527.3 500 57.4
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 1.1e-145 520.8 511 56.0
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 5.5e-145 518.5 496 55.4
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 7.2e-145 518.1 511 55.6
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 1.0e-143 514.2 511 55.4
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 1.0e-143 514.2 511 55.4
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 4.4e-142 508.8 497 55.9
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 6.3e-141 505.0 495 53.9
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 5.3e-140 501.9 496 56.0
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 1.6e-139 500.4 497 54.1
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 2.9e-138 496.1 497 53.9
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 1.1e-137 494.2 496 54.4
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 3.2e-137 492.7 505 53.7
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 5.5e-137 491.9 498 51.6
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 1.2e-136 490.7 501 54.9
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 1.2e-136 490.7 501 51.5
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 2.1e-136 490.0 497 53.9
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 3.6e-136 489.2 496 54.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 6.1e-136 488.4 495 53.9
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 1.8e-135 486.9 505 52.9
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 2.6e-134 483.0 505 52.5
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 1.3e-133 480.7 517 51.6
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 1.7e-133 480.3 504 54.0
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 8.3e-133 478.0 503 51.3
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.8e-132 476.9 503 52.5
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 2.4e-132 476.5 497 53.7
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 1.2e-131 474.2 500 53.2
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 3.5e-131 472.6 518 52.3
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 1.0e-130 471.1 502 51.2
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 2.9e-130 469.5 496 55.2
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.5e-129 467.2 494 51.6
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 2.5e-129 466.5 496 52.8
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 7.2e-129 464.9 501 50.1
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 1.2e-128 464.2 499 51.7
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 1.6e-128 463.8 504 50.0
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 2.8e-128 463.0 512 51.6
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 1.4e-127 460.7 503 51.1
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 4.0e-127 459.1 494 50.4
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 4.0e-127 459.1 501 51.9
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 5.2e-127 458.8 497 50.7
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 1.3e-125 454.1 506 49.4
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 1.3e-125 454.1 499 50.9
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 2.2e-125 453.4 496 49.6
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 3.7e-125 452.6 495 50.3
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 1.4e-124 450.7 498 48.0
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 1.8e-124 450.3 494 49.8
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 2.4e-124 449.9 494 52.0
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 7.0e-124 448.4 497 51.1
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.6e-123 447.2 495 49.1
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 2.3e-122 443.4 507 50.9
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 5.0e-122 442.2 476 52.1
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 6.6e-122 441.8 506 50.8
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 6.6e-122 441.8 510 49.2
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 8.6e-122 441.4 508 48.6
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 2.5e-121 439.9 499 50.3
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 5.6e-121 438.7 512 50.4
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 7.3e-121 438.3 496 50.0
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 2.1e-120 436.8 499 49.9
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 4.7e-120 435.6 507 49.3
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 8.0e-120 434.9 498 49.0
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 1.4e-119 434.1 503 50.7
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 4.4e-118 429.1 505 49.1
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 7.5e-118 428.3 504 49.2
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 4.9e-117 425.6 506 48.6
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 6.4e-117 425.2 501 47.3
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 6.0e-115 418.7 509 48.9
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 6.0e-115 418.7 508 49.2
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.0e-114 417.9 498 47.0
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 1.3e-114 417.5 509 49.1
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 7.3e-113 411.8 497 45.3
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.2e-112 411.0 501 44.1
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 1.6e-112 410.6 498 46.6
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 2.1e-112 410.2 348 58.6
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 2.1e-112 410.2 456 51.1
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 3.6e-112 409.5 503 46.7
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 8.0e-112 408.3 501 46.7
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.8e-111 407.1 503 48.1
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 6.8e-111 405.2 500 48.2
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 1.2e-110 404.4 497 46.9
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 1.2e-110 404.4 496 47.6
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 5.8e-110 402.1 497 47.7
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 2.2e-109 400.2 375 57.3
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 1.7e-106 390.6 500 47.0
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 4.7e-104 382.5 500 46.0
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 3.1e-103 379.8 491 45.6
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 4.0e-103 379.4 498 44.2
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 5.8e-102 375.6 382 54.5
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 3.9e-98 362.8 516 41.3
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 1.6e-96 357.5 525 43.8
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 1.2e-94 351.3 496 42.9
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 4.0e-87 326.2 372 49.5
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 4.4e-86 322.8 337 47.8
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 1.4e-84 317.8 330 54.8
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 3.5e-83 313.2 270 57.0
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 6.9e-79 298.9 520 40.0
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 1.9e-73 280.8 190 68.9
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 1.9e-73 280.8 190 68.9
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.6e-64 251.1 333 46.5
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 2.4e-55 220.7 220 51.4
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 9.4e-52 208.8 510 31.8
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 1.4e-50 204.9 160 58.8
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 1.1e-49 201.8 346 34.7
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 6.5e-45 186.0 358 30.4
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 5.0e-37 159.8 255 36.9
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 2.3e-34 151.0 255 34.9
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-26 125.2 189 45.0
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 2.6e-25 120.9 175 46.3
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 4.5e-22 110.2 103 48.5
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 1.0e-21 109.0 170 37.1
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 6.5e-21 106.3 98 55.1
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 1.8e-18 98.2 103 46.6
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 2.3e-18 97.8 143 39.2
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 1.5e-17 95.1 143 38.5
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 1.3e-13 82.0 183 30.1
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 2.9e-13 80.9 104 36.5
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 3.4e-09 67.4 98 40.8


User provided reference genes

Program Settings