Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02793 Vaccinium macrocarpon HOM05D000137 ORTHO05D038111 8.7e-60 233.4 116 100.0
Rhsim13G0050000 Rhododendron simsii HOM05D003029 ORTHO05D003413 3.0e-28 128.6 86 75.6
Actinidia23382 Actinidia chinensis HOM05D000137 ORTHO05D009307 5.5e-22 107.8 71 71.8
Atru.chr6.1448 Acer truncatum HOM05D000137 ORTHO05D009307 2.6e-19 99.0 70 70.0
Hma1.2p1_0226F.1_g095230 Hydrangea macrophylla HOM05D000137 ORTHO05D009307 4.8e-18 94.7 65 69.2
Actinidia30031 Actinidia chinensis HOM05D000137 ORTHO05D038111 8.3e-18 94.0 64 71.9
QL09p049880 Quercus lobata HOM05D000137 ORTHO05D009307 4.1e-17 91.7 80 60.0
Gohir.D11G146900 Gossypium hirsutum HOM05D000137 ORTHO05D009307 7.0e-17 90.9 64 67.2
Gohir.A11G140400 Gossypium hirsutum HOM05D000137 ORTHO05D009307 2.7e-16 89.0 64 65.6
Gorai.007G157300 Gossypium raimondii HOM05D000137 ORTHO05D009307 2.7e-16 89.0 64 65.6
Thecc.01G216400 Theobroma cacao HOM05D000137 ORTHO05D009307 2.7e-16 89.0 76 60.5
Sabra02G0188400 Salix brachista HOM05D000137 ORTHO05D009307 5.9e-16 87.8 70 60.0
CAN.G874.16 Capsicum annuum HOM05D000137 ORTHO05D009307 5.0e-15 84.7 62 64.5
Cc01_g16490 Coffea canephora HOM05D000137 ORTHO05D009307 5.0e-15 84.7 63 66.7
Gorai.001G230900 Gossypium raimondii HOM05D000137 ORTHO05D009307 5.0e-15 84.7 70 58.6
Glyma.03G085700 Glycine max HOM05D000137 ORTHO05D009307 6.5e-15 84.3 70 57.1
Nitab4.5_0003020g0180 Nicotiana tabacum HOM05D000137 ORTHO05D009307 1.9e-14 82.8 62 61.3
TWI75G1321 Tripterygium wilfordii HOM05D000137 ORTHO05D009307 2.5e-14 82.4 67 58.2
Gohir.D07G204900 Gossypium hirsutum HOM05D000137 ORTHO05D009307 3.2e-14 82.0 69 58.0
Prupe.8G196200 Prunus persica HOM05D000137 ORTHO05D009307 3.2e-14 82.0 76 53.9
Glyma.16G088700 Glycine max HOM05D000137 ORTHO05D009307 5.5e-14 81.3 70 54.3
EL10Ac7g17936 Beta vulgaris HOM05D000137 ORTHO05D009307 7.2e-14 80.9 71 52.1
PGSC0003DMG400020173 Solanum tuberosum HOM05D000137 ORTHO05D009307 2.1e-13 79.3 60 61.7
MD05G1169100 Malus domestica HOM05D000137 ORTHO05D009307 2.7e-13 79.0 76 52.6
Medtr8g012450 Medicago truncatula HOM05D000137 ORTHO05D009307 4.7e-13 78.2 64 54.7
RcHm_v2.0_Chr6g0283731 Rosa chinensis HOM05D000137 ORTHO05D009307 4.7e-13 78.2 75 52.0
Phvul.010G023600 Phaseolus vulgaris HOM05D000137 ORTHO05D009307 6.1e-13 77.8 71 54.9
TPR.G16715 Trifolium pratense HOM05D000137 ORTHO05D009307 1.0e-12 77.0 64 53.1
Duzib133G1435 Durio zibethinus HOM05D000137 ORTHO05D009307 1.8e-12 76.3 70 54.3
VMungo0331G2061 Vigna mungo HOM05D000137 ORTHO05D009307 1.8e-12 76.3 71 53.5
Ca_23213_v3 Cicer arietinum L. HOM05D000137 ORTHO05D009307 2.3e-12 75.9 64 53.1
Lj3g0005590 Lotus japonicus HOM05D000137 ORTHO05D009307 2.3e-12 75.9 76 47.4
Oeu030275.1 Olea europaea HOM05D000137 ORTHO05D009307 2.3e-12 75.9 64 60.9
Eucgr.K02126 Eucalyptus grandis HOM05D000137 ORTHO05D009307 3.0e-12 75.5 70 55.7
EL10Ac8g19567 Beta vulgaris HOM05D000137 ORTHO05D009307 4.0e-12 75.1 71 52.1
HanXRQChr04g0108301 Helianthus annuus HOM05D000137 ORTHO05D009307 4.0e-12 75.1 73 50.7
arahy.Tifrunner.gnm1.ann1.1E12MN Arachis hypogaea HOM05D000137 ORTHO05D009307 5.2e-12 74.7 66 54.5
arahy.Tifrunner.gnm1.ann1.ZSL8AZ Arachis hypogaea HOM05D000137 ORTHO05D009307 5.2e-12 74.7 66 54.5
FvH4_2g18351 Fragaria vesca HOM05D000137 ORTHO05D009307 5.2e-12 74.7 69 53.6
Sopen06g034600 Solanum pennellii HOM05D000137 ORTHO05D009307 8.8e-12 73.9 60 58.3
Peaxi162Scf01312g00070 Petunia axillaris HOM05D000137 ORTHO05D009307 1.2e-11 73.6 61 57.4
Solyc06g083210.3 Solanum lycopersicum HOM05D000137 ORTHO05D009307 2.0e-11 72.8 60 58.3
AUR62016526 Chenopodium quinoa HOM05D000137 ORTHO05D009307 2.6e-11 72.4 60 58.3
AT4G13020 Arabidopsis thaliana HOM05D000137 ORTHO05D009307 3.4e-11 72.0 78 51.3
AUR62001150 Chenopodium quinoa HOM05D000137 ORTHO05D009307 7.5e-11 70.9 60 56.7
CANSAT01G0825 Cannabis sativa HOM05D000137 ORTHO05D009307 9.8e-11 70.5 64 51.6
CANSAT01G2624 Cannabis sativa HOM05D000137 ORTHO05D009307 9.8e-11 70.5 64 51.6
Cpa.g.sc8.120 Carica papaya HOM05D000137 ORTHO05D009307 2.2e-10 69.3 48 72.9
MD10G1157400 Malus domestica HOM05D000137 ORTHO05D009307 2.2e-10 69.3 64 51.6
ECA236G4462 Erigeron canadensis HOM05D000137 ORTHO05D009307 6.3e-10 67.8 65 50.8
Migut.D02516 Erythranthe guttata HOM05D000137 ORTHO05D009307 6.3e-10 67.8 63 54.0
Lsat_1_v5_gn_8_89101 Lactuca sativa HOM05D000137 ORTHO05D009307 6.3e-10 67.8 70 51.4
Lj1A90T43 Lonicera japonica HOM05D000137 ORTHO05D009307 6.3e-10 67.8 83 47.0
AL9U11380 Arabidopsis lyrata HOM05D000137 ORTHO05D009307 8.3e-10 67.4 73 53.4
Lalb_Chr13g0291071 Lupinus albus HOM05D000137 ORTHO05D009307 2.4e-09 65.9 80 46.2
CiPaw.13G050200 Carya illinoinensis HOM05D000137 ORTHO05D009307 7.0e-09 64.3 58 55.2
Sp3g32320 Schrenkiella parvula HOM05D000137 ORTHO05D009307 7.0e-09 64.3 67 53.7
Ciclev10023852m.g Citrus clementina HOM05D000137 ORTHO05D009307 1.6e-08 63.2 57 52.6
Nitab4.5_0012974g0010 Nicotiana tabacum HOM05D000137 ORTHO05D009307 2.7e-08 62.4 52 55.8
Nitab4.5_0000403g0110 Nicotiana tabacum HOM05D000137 ORTHO05D009307 4.5e-08 61.6 60 51.7
THA.LOC104804635 Tarenaya hassleriana HOM05D000137 ORTHO05D009307 4.5e-08 61.6 83 44.6
THA.LOC104808801 Tarenaya hassleriana HOM05D000137 ORTHO05D009307 4.5e-08 61.6 75 50.7
TAR636G3692 Trochodendron aralioides HOM05D000137 ORTHO05D009307 4.5e-08 61.6 71 47.9
GSVIVG01005924001 Vitis vinifera HOM05D000137 ORTHO05D009307 4.5e-08 61.6 48 62.5
SalBow6G2703 Salvia bowleyana HOM05D000137 ORTHO05D009307 7.7e-08 60.8 66 48.5
SalBow6G3410 Salvia bowleyana HOM05D000137 ORTHO05D009307 7.7e-08 60.8 63 50.8
Nn1g08191 Nelumbo nucifera HOM05D000137 ORTHO05D009307 1.0e-07 60.5 79 48.1
MSTRG.18826 Avicennia marina HOM05D000137 ORTHO05D009307 1.7e-07 59.7 62 48.4
Sc17g0001950 Simmondsia chinensis HOM05D006751 ORTHO05D009307 2.3e-07 59.3 49 55.1
TWI36G1116 Tripterygium wilfordii HOM05D000137 ORTHO05D009307 5.0e-07 58.2 56 51.8
Psat4g204520 Pisum sativum HOM05D000137 ORTHO05D009307 8.6e-07 57.4 41 61.0
FAN27G0238 Fragaria x ananassa HOM05D006751 ORTHO05D009307 3.3e-06 55.5 48 56.2
FAN27G0294 Fragaria x ananassa HOM05D006751 ORTHO05D008710 3.3e-06 55.5 48 56.2
BcaB03g16672 Brassica carinata HOM05D000137 ORTHO05D009307 4.2e-06 55.1 69 49.3
Hund05588 Selenicereus undatus HOM05D000137 ORTHO05D009307 4.2e-06 55.1 67 50.7
BcaC06g36475 Brassica carinata HOM05D000137 ORTHO05D009307 5.5e-06 54.7 69 49.3
Aqoxy2G03928 Aquilegia oxysepala HOM05D000137 ORTHO05D009307 7.2e-06 54.3 51 52.9
A07p01820 Brassica napus HOM05D000137 ORTHO05D009307 9.5e-06 53.9 71 49.3
BraA07t27982Z Brassica rapa HOM05D000137 ORTHO05D009307 9.5e-06 53.9 71 49.3


User provided reference genes

Program Settings