Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.2e-185 652.1 328 100.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.0e-153 547.0 316 88.3
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 5.4e-147 524.6 326 82.8
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 1.8e-139 499.6 332 76.8
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.1e-139 498.8 328 77.1
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.2e-138 496.9 320 80.0
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 2.7e-138 495.7 326 77.9
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 2.5e-136 489.2 325 77.2
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 4.7e-135 485.0 322 76.7
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.0e-134 483.8 325 76.3
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.3e-134 482.6 332 73.8
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 3.0e-134 482.3 321 76.6
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 6.8e-134 481.1 324 74.4
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 2.0e-133 479.6 326 74.2
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 1.3e-132 476.9 326 76.1
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.3e-132 476.9 324 74.1
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 6.4e-132 474.6 324 74.1
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 8.3e-132 474.2 324 73.8
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.4e-131 473.4 326 73.3
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.8e-131 473.0 328 73.2
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.4e-131 472.6 325 74.2
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 3.2e-131 472.2 326 74.2
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 5.4e-131 471.5 324 73.5
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.2e-130 470.3 325 73.5
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.2e-130 470.3 325 73.2
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.6e-130 469.9 325 73.8
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.6e-130 469.9 325 73.8
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.0e-130 469.5 328 72.6
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.7e-130 469.2 328 73.5
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 3.5e-130 468.8 328 73.2
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 4.6e-130 468.4 333 72.4
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.0e-129 467.2 328 73.2
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.7e-129 466.5 311 75.2
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.7e-129 466.5 325 73.5
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 3.0e-129 465.7 322 73.6
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 6.6e-129 464.5 328 72.9
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 5.6e-128 461.5 329 71.1
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 5.6e-128 461.5 324 71.9
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 1.6e-127 459.9 320 74.7
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 2.1e-127 459.5 330 70.9
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 2.8e-127 459.1 324 72.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 6.2e-127 458.0 323 71.2
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 1.0e-126 457.2 329 70.5
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.8e-126 456.4 328 71.0
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 2.3e-126 456.1 330 70.6
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 2.3e-126 456.1 330 70.0
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.1e-126 455.7 325 71.7
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 6.8e-126 454.5 331 71.0
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.2e-125 453.8 326 72.4
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.2e-125 453.8 323 72.1
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.5e-125 453.4 325 71.4
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-125 453.0 322 69.3
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 2.0e-125 453.0 325 72.0
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.0e-125 453.0 324 72.8
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 5.8e-125 451.4 324 71.3
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 5.8e-125 451.4 325 71.4
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 7.5e-125 451.1 322 72.0
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 7.5e-125 451.1 329 71.1
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 9.8e-125 450.7 328 69.5
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.3e-124 450.3 327 71.6
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.7e-124 449.9 326 71.8
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 1.7e-124 449.9 324 71.3
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 4.1e-123 445.3 323 68.7
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 4.1e-123 445.3 320 71.2
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 5.4e-123 444.9 323 72.4
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 5.4e-123 444.9 321 70.4
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 7.0e-123 444.5 320 70.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.7e-122 442.6 321 69.5
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 7.8e-122 441.0 321 70.4
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-121 440.3 324 68.2
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 5.0e-121 438.3 323 68.1
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.0e-121 438.3 328 68.9
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 6.6e-121 438.0 347 66.9
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 6.6e-121 438.0 330 70.0
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.1e-120 437.2 326 67.8
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 1.1e-120 437.2 326 67.8
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 2.5e-120 436.0 326 68.1
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 3.3e-120 435.6 327 67.3
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 3.3e-120 435.6 324 68.2
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 7.3e-120 434.5 334 68.6
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.6e-119 433.3 322 67.4
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 4.7e-119 431.8 326 66.9
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 4.0e-118 428.7 324 67.6
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 5.8e-117 424.9 326 67.2
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 5.8e-117 424.9 286 74.5
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 4.9e-116 421.8 346 65.3
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.4e-115 420.2 325 68.3
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 3.0e-113 412.5 323 64.4
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 4.7e-111 405.2 325 63.1
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 1.8e-110 403.3 332 63.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.7e-106 389.4 384 58.1
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.7e-105 386.7 330 61.8
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.5e-104 382.9 305 65.6
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 2.6e-101 372.9 288 66.3
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 2.6e-101 372.9 320 62.8
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.7e-100 370.2 317 62.5
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.7e-97 360.1 249 73.5
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.9e-96 356.7 326 58.9
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.6e-95 352.4 318 57.2
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.7e-92 343.6 236 73.3
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.1e-91 340.9 319 57.1
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 9.3e-91 337.8 317 54.6
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.9e-89 332.4 317 53.0
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.5e-88 330.5 293 61.1
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.8e-86 323.6 318 52.8
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.2e-84 316.6 246 68.3
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 5.3e-78 295.4 358 47.2
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.8e-76 289.3 242 66.1
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.1e-74 283.5 246 60.2
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.1e-72 277.7 195 70.8
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.5e-72 276.6 195 68.7
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 2.4e-70 270.0 194 68.6
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 2.5e-67 260.0 348 45.1
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 7.4e-64 248.4 246 60.6
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 1.1e-51 208.0 162 64.2
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.3e-49 200.3 226 57.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.6e-48 196.8 227 48.5
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.4e-48 196.1 162 63.0
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 9.1e-46 188.3 112 80.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.4e-41 174.5 302 38.1
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 8.5e-36 155.2 319 37.0
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.6e-34 151.0 325 34.2
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.8e-33 147.5 123 61.0
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.8e-28 129.8 120 61.7
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.2e-24 118.2 83 73.5
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.7e-23 114.4 170 44.7
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.4e-22 111.3 73 74.0
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 4.1e-22 109.8 120 55.0
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 7.8e-21 105.5 69 75.4
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.8e-20 103.2 90 61.1
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.6e-18 97.8 123 48.8
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 1.6e-18 97.8 104 48.1
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 8.0e-18 95.5 64 76.6
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.8e-17 94.4 80 67.5
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 2.3e-17 94.0 66 66.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.0e-17 93.6 155 35.5
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 5.7e-16 89.4 88 54.5
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 9.8e-16 88.6 60 73.3
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 7.8e-13 79.0 82 53.7
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 1.4e-06 58.2 44 70.5
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 3.2e-06 57.0 45 62.2


User provided reference genes

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