Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1367.4 637 100.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1202.6 656 83.5
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 0.0e+00 1196.0 845 70.1
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1181.4 608 86.7
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1173.7 626 83.1
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1169.5 637 82.9
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1160.6 637 81.8
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1160.6 639 82.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1159.1 629 83.3
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1157.9 637 82.9
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1157.1 637 82.1
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1154.0 626 82.9
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1148.3 637 80.7
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1146.7 625 82.9
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1144.0 630 81.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1144.0 629 82.2
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1143.6 611 84.3
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1142.1 639 80.6
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1140.6 622 82.0
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1140.2 628 82.3
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1140.2 601 84.4
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1139.4 638 80.6
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1138.6 637 80.5
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1137.5 637 79.6
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1137.1 620 81.1
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1135.9 652 79.4
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1134.0 625 80.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1133.6 637 80.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1133.2 627 80.9
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1132.1 637 80.7
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1132.1 629 81.7
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1132.1 630 80.8
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1130.9 635 80.2
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1129.0 638 80.1
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 634 80.3
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1126.3 611 82.2
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1125.5 611 83.1
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1125.2 630 79.8
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1124.4 629 80.9
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1122.1 630 80.6
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1119.4 625 80.5
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1119.0 634 79.3
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1118.6 633 79.6
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1117.8 637 79.3
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1117.4 631 80.5
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1114.4 601 82.5
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 0.0e+00 1113.6 637 81.5
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 637 79.1
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1106.7 639 78.7
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1104.0 612 80.6
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1103.2 628 79.0
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1103.2 612 80.4
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1094.3 649 75.0
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1093.6 610 80.5
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 0.0e+00 1093.2 769 67.4
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1090.9 598 82.1
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1090.5 639 76.8
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 0.0e+00 1090.1 610 80.3
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 610 79.5
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 609 79.3
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 629 78.9
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 609 79.1
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 609 79.1
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1083.6 630 77.1
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1083.6 630 77.1
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1083.6 629 76.9
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 666 73.7
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1078.2 609 79.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1075.8 601 80.5
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 638 76.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 8.7e-312 1073.2 609 79.1
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 8.7e-312 1072.8 595 80.0
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.7e-311 1072.0 635 75.3
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.2e-311 1071.6 631 76.5
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.2e-311 1071.6 657 74.4
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.4e-308 1061.6 628 75.5
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.2e-305 1050.8 746 67.3
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 7.1e-305 1050.0 608 77.3
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.2e-304 1049.3 679 72.5
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.6e-299 1031.6 637 74.1
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 2.1e-296 1021.9 604 77.6
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.3e-295 1019.2 556 81.5
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.1e-292 1009.6 674 70.3
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.2e-290 1001.9 674 70.0
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.9e-286 988.8 589 76.2
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 9.7e-286 986.5 561 79.7
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 2.2e-282 975.3 549 80.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 8.5e-282 973.4 553 80.3
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 2.5e-281 971.8 536 81.5
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 4.6e-280 967.6 583 75.8
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 6.7e-279 963.8 611 73.2
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 4.3e-278 961.1 560 78.0
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.1e-276 954.5 546 80.2
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 5.3e-276 954.1 571 75.8
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.1e-273 946.4 549 77.4
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.5e-273 945.3 603 73.6
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 9.4e-273 943.3 608 72.7
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.4e-268 929.5 618 71.2
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.9e-257 892.5 602 69.4
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.2e-246 856.7 601 63.7
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 5.4e-244 847.8 606 63.4
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 6.8e-231 804.3 491 74.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.4e-230 802.0 603 60.0
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.2e-222 776.9 608 59.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.1e-215 753.8 557 62.5
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 9.9e-214 747.3 455 76.0
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 9.6e-201 704.1 410 77.3
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 2.1e-195 686.4 379 81.0
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.9e-193 679.9 465 68.6
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 3.1e-183 646.0 354 83.1
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 2.9e-181 639.4 448 67.6
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 7.5e-137 491.9 246 87.4
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 4.7e-131 472.6 462 53.7
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 4.3e-116 422.9 258 77.5
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 8.6e-93 345.5 202 77.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.4e-88 329.3 188 76.1
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.9e-79 301.2 175 79.4
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 9.3e-71 272.3 178 70.2
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.9e-64 250.8 130 85.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.9e-64 250.8 122 89.3
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.5e-55 221.1 158 62.7
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 1.5e-52 211.8 155 61.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 4.5e-49 200.3 340 37.1
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 1.7e-43 181.8 105 78.1
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 1.1e-42 179.1 121 65.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 4.2e-39 167.2 83 86.7
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.8e-35 154.5 103 73.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 6.3e-35 153.3 87 78.2
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.5e-33 147.1 87 77.0
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.5e-33 147.1 87 77.0
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.2e-31 140.6 149 51.0
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.8e-29 135.2 66 92.4
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.2e-25 122.5 211 34.1
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.5e-23 114.8 82 69.5
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 7.2e-23 113.2 79 68.4
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.0e-22 109.8 78 65.4
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.3e-21 108.2 51 88.2
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.0e-21 107.8 56 82.1
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.0e-21 107.8 56 82.1
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 4.0e-21 107.5 306 26.5
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-20 105.5 78 62.8
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.7e-19 102.1 205 29.3
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.1e-18 99.4 79 60.8
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 1.8e-18 98.6 208 26.0
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 3.1e-18 97.8 79 59.5
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.0e-18 96.7 73 63.0
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.0e-18 96.7 73 63.0
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.9e-16 91.3 138 39.9
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 7.2e-15 86.7 68 61.8
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 5.4e-10 70.5 32 84.4


User provided reference genes

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