Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.5e-88 328.2 201 100.0
Rhsim13G0037800 Rhododendron simsii HOM05D014006 ORTHO05D014830 1.3e-34 150.6 99 74.7
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.6e-16 89.0 72 59.7
Aqoxy2G03700 Aquilegia oxysepala HOM05D000218 ORTHO05D014830 4.6e-16 89.0 98 48.0
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.5e-14 83.2 75 68.0
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.3e-14 82.4 80 57.5
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.6e-14 81.3 67 65.7
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 9.6e-14 81.3 72 61.1
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.6e-13 80.5 66 65.2
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.1e-12 76.3 69 62.3
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 1.2e-11 74.3 68 58.8
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 1.2e-11 74.3 72 54.2
Aqoxy3G01569 Aquilegia oxysepala HOM05D000218 ORTHO05D014830 1.5e-11 73.9 83 47.0
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 2.0e-11 73.6 74 58.1
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 2.0e-11 73.6 56 66.1
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 2.6e-11 73.2 66 60.6
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 3.4e-11 72.8 66 60.6
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 4.5e-11 72.4 72 61.1
Nn1g02878 Nelumbo nucifera HOM05D000218 ORTHO05D000125 7.6e-11 71.6 92 40.2
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 7.6e-11 71.6 86 48.8
RcHm_v2.0_Chr6g0287491 Rosa chinensis HOM05D014006 ORTHO05D014830 7.6e-11 71.6 95 43.2
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 9.9e-11 71.2 69 59.4
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 9.9e-11 71.2 72 55.6
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 2.2e-10 70.1 102 45.1
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 2.2e-10 70.1 50 68.0
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 3.8e-10 69.3 57 63.2
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 4.9e-10 68.9 50 66.0
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 6.4e-10 68.6 59 59.3
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 6.4e-10 68.6 64 59.4
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 6.4e-10 68.6 59 59.3
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 8.4e-10 68.2 74 55.4
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-09 67.8 49 67.3
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.4e-09 66.6 48 68.8
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.4e-09 66.6 48 68.8
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.4e-09 66.6 75 54.7
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 3.2e-09 66.2 66 57.6
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 3.2e-09 66.2 66 54.5
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 4.2e-09 65.9 104 42.3
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 4.2e-09 65.9 72 54.2
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 7.1e-09 65.1 55 72.7
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 9.3e-09 64.7 67 55.2
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 9.3e-09 64.7 100 42.0
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 9.3e-09 64.7 70 51.4
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 1.6e-08 63.9 59 59.3
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 2.1e-08 63.5 59 62.7
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 3.5e-08 62.8 49 65.3
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.6e-08 62.4 56 57.1
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 4.6e-08 62.4 58 55.2
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 4.6e-08 62.4 58 55.2
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 4.6e-08 62.4 48 60.4
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 4.6e-08 62.4 71 54.9
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 4.6e-08 62.4 54 59.3
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 4.6e-08 62.4 54 55.6
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.0e-08 62.0 49 63.3
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 6.0e-08 62.0 49 65.3
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 1.0e-07 61.2 49 59.2
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.0e-07 61.2 48 62.5
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 1.0e-07 61.2 87 47.1
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 1.0e-07 61.2 38 73.7
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 1.3e-07 60.8 91 46.2
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.3e-07 60.8 93 41.9
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.3e-07 60.8 93 41.9
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 2.3e-07 60.1 47 59.6
Hma1.2p1_0273F.1_g109420 Hydrangea macrophylla HOM05D014006 ORTHO05D014830 3.0e-07 59.7 57 49.1
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 3.0e-07 59.7 95 44.2
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.0e-07 59.7 51 60.8
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 3.9e-07 59.3 74 50.0
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 3.9e-07 59.3 52 55.8
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 5.1e-07 58.9 69 53.6
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 6.7e-07 58.5 73 57.5
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 6.7e-07 58.5 72 47.2
Rhsim13G0015600 Rhododendron simsii HOM05D002879 ORTHO05D002930 6.7e-07 58.5 58 62.1
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 8.7e-07 58.2 69 50.7
Sed0017062 Sechium edule HOM05D002879 ORTHO05D002930 8.7e-07 58.2 49 61.2
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.1e-06 57.8 48 60.4
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.5e-06 57.4 43 67.4
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 1.9e-06 57.0 48 60.4
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.5e-06 56.6 48 60.4
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 4.3e-06 55.8 51 51.0
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 4.3e-06 55.8 44 63.6
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 4.3e-06 55.8 50 60.0
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 5.6e-06 55.5 73 52.1
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 5.6e-06 55.5 70 47.1
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 5.6e-06 55.5 44 63.6


User provided reference genes

Program Settings