Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02633 Vaccinium macrocarpon HOM05D008619 ORTHO05D000090 6.4e-86 322.8 681 100.0
Actinidia33760 Actinidia chinensis HOM05D000162 ORTHO05D000090 7.7e-31 139.8 264 62.1
CSS0034526 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 6.7e-27 126.7 107 65.4
CSS0040127 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 1.2e-26 125.9 107 64.5
Hma1.2p1_0172F.1_g076330 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 1.2e-18 99.4 103 52.4
QL12p042932 Quercus lobata HOM05D000162 ORTHO05D000090 4.4e-18 97.4 88 58.0
QL04p081370 Quercus lobata HOM05D000162 ORTHO05D000090 7.5e-18 96.7 88 56.8
RcHm_v2.0_Chr6g0289221 Rosa chinensis HOM05D000162 ORTHO05D000090 9.8e-18 96.3 91 53.8
Thecc.01G265100 Theobroma cacao HOM05D008619 ORTHO05D000090 2.8e-17 94.7 108 48.1
Haze_24551 Corylus avellana HOM05D000162 ORTHO05D000090 4.8e-17 94.0 126 44.4
RcHm_v2.0_Chr6g0289191 Rosa chinensis HOM05D000162 ORTHO05D000090 4.8e-17 94.0 113 49.6
TAR629G0197 Trochodendron aralioides HOM05D000162 ORTHO05D000090 1.4e-16 92.4 102 50.0
GSVIVG01000757001 Vitis vinifera HOM05D000162 ORTHO05D000090 1.8e-16 92.0 262 54.2
Prupe.8G230100 Prunus persica HOM05D008619 ORTHO05D000090 3.5e-15 87.8 108 41.7
Lj1P60T47 Lonicera japonica HOM05D008619 ORTHO05D000090 2.3e-14 85.1 120 47.5
FvH4_2g22260 Fragaria vesca HOM05D000162 ORTHO05D000090 1.1e-13 82.8 88 48.9
Nitab4.5_0003279g0010 Nicotiana tabacum HOM05D008619 ORTHO05D000090 1.1e-13 82.8 54 70.4
FAN27G0396 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-13 82.4 109 44.0
MD05G1203800 Malus domestica HOM05D008619 ORTHO05D000090 3.2e-13 81.3 126 39.7
FAN24G2639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.5e-13 79.7 88 47.7
Lsat_1_v5_gn_9_9621 Lactuca sativa HOM05D000162 ORTHO05D000090 4.7e-12 77.4 99 44.4
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 1.0e-11 76.3 122 37.7
Cc01_g18680 Coffea canephora HOM05D000162 ORTHO05D000090 1.4e-11 75.9 101 43.6
Nitab4.5_0000187g0340 Nicotiana tabacum HOM05D008619 ORTHO05D000090 2.3e-11 75.1 51 68.6
MBI11_g34863_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 3.0e-11 74.7 106 39.6
Cpa.g.sc161.35 Carica papaya HOM05D000162 ORTHO05D000090 1.2e-10 72.8 105 44.8
CANSAT11G1734 Cannabis sativa HOM05D000162 ORTHO05D000090 4.4e-10 70.9 122 40.2
Gohir.A11G128001 Gossypium hirsutum HOM05D024768 ORTHO05D021044 4.4e-10 70.9 103 43.7
Atru.chr6.396 Acer truncatum HOM05D000162 ORTHO05D000090 5.7e-10 70.5 89 48.3
Atru.chr6.444 Acer truncatum HOM05D000162 ORTHO05D000090 5.7e-10 70.5 89 48.3
ClCG09G021760 Citrullus lanatus HOM05D008619 ORTHO05D000090 5.7e-10 70.5 126 37.3
CsaV3_7G027720 Cucumis sativus L. HOM05D008619 ORTHO05D000090 5.7e-10 70.5 101 42.6
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 7.5e-10 70.1 87 46.0
Atru.chr5.1765 Acer truncatum HOM05D008619 ORTHO05D000090 2.8e-09 68.2 85 42.4
ClCG09G008330 Citrullus lanatus HOM05D008619 ORTHO05D000090 3.7e-09 67.8 67 47.8
MELO3C015722.2 Cucumis melo HOM05D008619 ORTHO05D025208 3.7e-09 67.8 57 57.9
Ciclev10024138m.g Citrus clementina HOM05D000162 ORTHO05D000090 4.9e-09 67.4 70 51.4
Sed0018285 Sechium edule HOM05D008619 ORTHO05D000090 4.9e-09 67.4 98 41.8
CsaV3_7G027280 Cucumis sativus L. HOM05D008619 ORTHO05D000090 6.3e-09 67.0 55 54.5
CsaV3_7G027920 Cucumis sativus L. HOM05D008619 ORTHO05D000090 6.3e-09 67.0 87 43.7
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 8.3e-09 66.6 61 45.9
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.1e-08 66.2 107 40.2
CsaV3_7G027260 Cucumis sativus L. HOM05D008619 ORTHO05D000090 1.1e-08 66.2 103 37.9
Rhsim13G0031600 Rhododendron simsii HOM05D001376 ORTHO05D003384 1.1e-08 66.2 60 60.0
COL.COLO4_20165 Corchorus olitorius HOM05D000162 ORTHO05D000090 1.4e-08 65.9 59 50.8
Sed0025187 Sechium edule HOM05D008619 ORTHO05D000090 1.4e-08 65.9 57 52.6
CsaV3_7G027240 Cucumis sativus L. HOM05D008619 ORTHO05D000090 1.8e-08 65.5 114 38.6
Atru.chr6.231 Acer truncatum HOM05D000162 ORTHO05D000090 3.1e-08 64.7 70 41.4
COL.COLO4_20303 Corchorus olitorius HOM05D000162 ORTHO05D000090 3.1e-08 64.7 59 49.2
COL.COLO4_34076 Corchorus olitorius HOM05D000162 ORTHO05D000090 4.1e-08 64.3 59 50.8
MELO3C028898.2 Cucumis melo HOM05D008619 ORTHO05D000090 5.4e-08 63.9 58 55.2
MBI11_g45331_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 5.4e-08 63.9 65 44.6
Oeu025825.1 Olea europaea HOM05D000162 ORTHO05D000090 5.4e-08 63.9 62 53.2
Sed0021875 Sechium edule HOM05D008619 ORTHO05D000090 9.2e-08 63.2 121 36.4
COL.COLO4_09887 Corchorus olitorius HOM05D000162 ORTHO05D000090 1.2e-07 62.8 68 44.1
Duzib138G1327 Durio zibethinus HOM05D008619 ORTHO05D000090 1.6e-07 62.4 117 38.5
Nn1g02607 Nelumbo nucifera HOM05D000162 ORTHO05D000090 2.0e-07 62.0 65 44.6
Sed0005043 Sechium edule HOM05D008619 ORTHO05D000090 2.0e-07 62.0 87 39.1
COL.COLO4_20322 Corchorus olitorius HOM05D000162 ORTHO05D000090 4.5e-07 60.8 59 47.5
Ciclev10003153m.g Citrus clementina HOM05D000162 ORTHO05D000090 5.9e-07 60.5 101 37.6
AUR62032236 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.8e-07 60.1 77 41.6
Sed0002057 Sechium edule HOM05D008619 ORTHO05D000090 1.0e-06 59.7 89 40.4
PSO017G1775 Papaver somniferum HOM05D000162 ORTHO05D000090 1.3e-06 59.3 55 49.1
PSO732G0487 Papaver somniferum HOM05D000162 ORTHO05D000090 1.3e-06 59.3 55 47.3
Sed0000927 Sechium edule HOM05D008619 ORTHO05D000090 1.3e-06 59.3 53 52.8
Sed0025833 Sechium edule HOM05D008619 ORTHO05D025208 1.3e-06 59.3 82 40.2
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 2.3e-06 58.5 50 46.0
CANSAT78G1348 Cannabis sativa HOM05D000162 ORTHO05D000090 2.3e-06 58.5 83 34.9
PSO732G0790 Papaver somniferum HOM05D000162 ORTHO05D000090 2.3e-06 58.5 55 49.1
THA.LOC104809084 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.3e-06 58.5 64 40.6
THA.LOC104809085 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.9e-06 58.2 61 45.9
Eucgr.K03302 Eucalyptus grandis HOM05D000162 ORTHO05D000090 3.8e-06 57.8 121 36.4
Nn1g02625 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.8e-06 57.8 67 41.8
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 3.8e-06 57.8 82 37.8
Sed0014539 Sechium edule HOM05D008619 ORTHO05D000090 5.0e-06 57.4 93 36.6
Aqoxy5G03438 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 6.6e-06 57.0 53 47.2
Migut.D00391 Erythranthe guttata HOM05D008619 ORTHO05D000090 6.6e-06 57.0 104 38.5
Gorai.005G047000 Gossypium raimondii HOM05D000162 ORTHO05D000090 6.6e-06 57.0 53 45.3
Lj8P594T25 Lonicera japonica HOM05D000162 ORTHO05D000090 6.6e-06 57.0 71 38.0
PSO732G0225 Papaver somniferum HOM05D000162 ORTHO05D000090 6.6e-06 57.0 55 47.3
PSO017G5411 Papaver somniferum HOM05D000162 ORTHO05D000090 8.6e-06 56.6 57 45.6
PSO675G7582 Papaver somniferum HOM05D000162 ORTHO05D000090 8.6e-06 56.6 58 44.8
PSO729G0261 Papaver somniferum HOM05D000162 ORTHO05D000090 8.6e-06 56.6 57 47.4
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 8.6e-06 56.6 54 50.0
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 8.6e-06 56.6 54 50.0


User provided reference genes

Program Settings