Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.4e-122 442.2 228 100.0
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 6.0e-113 411.0 228 92.5
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.3e-112 409.1 228 92.1
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.0e-112 408.7 228 92.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.0e-109 397.1 228 88.2
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 9.0e-109 397.1 228 89.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.0e-108 396.0 228 89.5
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 9.9e-108 393.7 228 87.7
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 2.2e-107 392.5 228 87.3
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 3.8e-107 391.7 215 93.5
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 4.9e-107 391.3 228 89.0
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.4e-106 389.8 228 87.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.4e-106 389.8 228 88.6
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.9e-106 389.4 228 87.3
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.9e-106 389.4 228 87.7
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.2e-106 388.7 228 86.8
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 4.2e-106 388.3 228 86.8
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 5.4e-106 387.9 228 87.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.2e-105 386.7 229 86.5
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.6e-105 386.3 228 87.3
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.1e-105 386.0 228 88.2
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 85.9
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.5e-105 385.2 228 86.0
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.5e-105 385.2 229 86.9
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.3e-104 382.5 228 86.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.3e-104 382.5 228 86.8
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 3.0e-104 382.1 220 90.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.9e-104 381.7 219 91.3
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.9e-104 381.7 228 84.6
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.5e-103 379.8 228 84.2
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.9e-103 379.4 230 87.0
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 4.3e-103 378.3 228 83.8
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 4.3e-103 378.3 228 84.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 9.6e-103 377.1 228 84.2
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 85.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 85.0
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 82.9
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 82.9
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 84.6
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.6e-102 376.3 230 85.2
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 85.5
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 83.8
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.6e-102 376.3 229 86.0
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.1e-102 375.9 228 82.9
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 2.1e-102 375.9 230 84.8
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.8e-102 375.6 229 86.0
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 3.6e-102 375.2 228 82.5
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.6e-102 375.2 229 85.6
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.6e-102 375.2 228 84.6
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 6.2e-102 374.4 220 84.5
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.2e-102 374.4 228 83.8
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 8.1e-102 374.0 230 84.3
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 8.1e-102 374.0 229 84.3
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-101 373.6 220 85.5
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 84.6
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.1e-101 373.6 230 85.2
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.4e-101 373.2 230 84.8
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 83.7
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.4e-101 372.5 228 83.8
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 228 81.6
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 3.1e-101 372.1 219 85.8
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 83.7
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 5.3e-101 371.3 228 82.9
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 6.9e-101 370.9 228 82.9
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 9.0e-101 370.5 228 81.6
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 9.0e-101 370.5 228 83.3
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.2e-100 370.2 229 84.3
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.2e-100 370.2 228 82.5
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 82.0
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 81.6
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.6e-100 369.0 222 83.8
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 82.8
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 3.4e-100 368.6 221 83.7
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 5.8e-100 367.9 228 81.1
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 5.8e-100 367.9 228 82.5
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 5.8e-100 367.9 228 84.2
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 5.8e-100 367.9 228 82.0
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 9.9e-100 367.1 229 84.7
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.8e-99 365.2 234 82.1
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 4.9e-99 364.8 228 79.8
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.9e-99 364.8 215 87.4
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 6.4e-99 364.4 219 84.5
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.4e-98 363.2 224 83.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.9e-98 362.8 218 84.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.9e-98 362.8 228 81.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.2e-98 362.1 228 82.0
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 4.2e-98 361.7 208 88.5
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 7.1e-98 360.9 228 82.0
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 9.3e-98 360.5 218 83.0
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 3.5e-97 358.6 226 82.3
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 4.6e-97 358.2 228 81.1
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.8e-96 356.3 229 80.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.9e-96 355.1 215 81.9
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.7e-96 354.4 215 84.2
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 6.7e-96 354.4 228 79.4
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 4.3e-95 351.7 223 79.8
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 5.6e-95 351.3 209 85.6
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 7.4e-95 350.9 215 83.7
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 7.4e-95 350.9 215 81.9
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 7.4e-95 350.9 228 78.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 9.6e-95 350.5 215 82.8
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 9.6e-95 350.5 215 84.2
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.6e-94 349.7 207 84.5
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.6e-94 349.7 206 85.4
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.7e-94 348.6 207 85.5
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 4.8e-94 348.2 260 70.8
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.8e-93 346.3 216 81.5
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.8e-93 346.3 215 80.9
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 5.3e-93 344.7 229 77.3
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 2.6e-92 342.4 215 79.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.4e-90 336.7 203 87.2
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.9e-90 336.3 228 76.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 3.7e-86 322.0 191 84.3
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 4.8e-86 321.6 229 73.4
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.4e-85 320.1 196 83.2
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 7.6e-84 314.3 230 73.9
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-83 313.2 221 72.9
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 2.9e-83 312.4 192 82.8
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.5e-79 299.3 196 78.1
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.3e-78 297.0 221 73.3
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 6.9e-77 291.2 228 68.0
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 4.2e-74 282.0 165 87.9
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 7.2e-74 281.2 230 68.3
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.4e-72 276.9 229 65.9
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.5e-71 272.7 165 81.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.7e-70 270.0 217 65.9
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 2.2e-70 269.6 194 73.7
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 5.3e-69 265.0 161 80.7
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 2.0e-68 263.1 198 73.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 3.4e-68 262.3 228 65.4
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 5.5e-66 255.0 197 68.0
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.2e-65 253.8 151 84.8
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 1.6e-65 253.4 153 81.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 7.0e-61 238.0 164 77.4
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.9e-59 232.6 238 52.5
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.8e-56 223.4 215 54.0
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 5.5e-50 201.8 137 72.3
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.2e-49 200.7 195 60.5
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.5e-43 177.9 116 80.2
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 6.8e-40 168.3 108 78.7
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 8.8e-40 167.9 101 81.2
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.4e-31 139.0 87 78.2
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.7e-30 137.1 110 70.0
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 3.7e-30 136.0 93 71.0
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.9e-27 126.3 135 54.8
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.3e-26 122.5 113 62.8
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 6.0e-20 102.1 63 74.6
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.5e-18 94.7 98 55.1
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.0e-16 89.4 52 88.5
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 5.8e-15 85.5 68 60.3
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.4e-13 80.1 70 64.3
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.1e-10 71.2 115 41.7
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 5.6e-10 68.9 209 28.7
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.7e-06 56.2 64 56.2


User provided reference genes

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