Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 5.7e-98 360.9 183 100.0
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.3e-75 285.8 183 79.8
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 6.2e-52 208.0 211 58.8
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 8.9e-51 204.1 214 58.9
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.5e-45 186.0 211 56.4
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.1e-44 183.0 175 58.9
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.8e-44 182.6 215 52.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 4.7e-44 181.8 210 54.8
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 4.0e-43 178.7 222 50.9
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.2e-42 177.2 212 49.5
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.0e-42 176.4 174 60.9
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 4.9e-41 171.8 211 47.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 6.4e-41 171.4 184 57.6
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.4e-40 170.2 176 58.0
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.7e-39 166.0 217 49.3
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.3e-38 163.7 171 56.7
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.3e-38 163.7 217 49.3
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.3e-38 163.7 217 49.3
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.9e-38 162.2 188 52.7
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 6.6e-38 161.4 183 53.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 4.3e-37 158.7 173 56.1
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.6e-36 156.8 169 55.0
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 2.1e-36 156.4 174 54.0
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.8e-36 155.2 179 52.5
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.2e-36 154.8 176 54.5
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 6.2e-36 154.8 218 46.8
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 8.1e-36 154.5 199 48.2
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.1e-35 154.1 176 54.5
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.4e-35 153.7 223 46.2
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.4e-35 153.7 221 46.2
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.4e-35 153.7 215 48.4
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.4e-35 152.9 182 51.1
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.0e-35 152.1 179 53.1
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 6.9e-35 151.4 214 46.7
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 9.0e-35 151.0 174 52.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 9.0e-35 151.0 174 54.0
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.2e-34 150.6 222 46.4
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 7.6e-34 147.9 185 50.3
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.3e-33 147.1 161 53.4
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.7e-33 146.7 171 56.7
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 2.2e-33 146.4 170 55.9
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.2e-33 146.4 172 53.5
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.9e-33 146.0 226 45.6
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.9e-33 146.0 172 52.3
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 3.8e-33 145.6 218 45.4
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.9e-33 145.2 222 44.6
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.4e-33 144.4 219 46.6
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.1e-32 144.1 217 46.5
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.9e-32 143.3 222 44.6
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.9e-32 143.3 171 50.3
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.9e-32 143.3 178 51.1
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.2e-32 142.5 210 46.7
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 4.2e-32 142.1 213 44.6
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 4.2e-32 142.1 224 46.9
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.4e-32 141.7 219 46.1
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 7.1e-32 141.4 218 44.5
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 9.3e-32 141.0 178 49.4
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.1e-31 139.8 223 45.7
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 2.1e-31 139.8 199 45.7
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.7e-31 139.4 219 45.7
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.5e-31 139.0 158 57.6
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.9e-31 137.9 215 45.1
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.0e-30 137.5 175 49.7
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.0e-30 137.5 179 52.5
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.0e-30 137.5 224 45.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.3e-30 137.1 213 43.7
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.8e-30 136.7 182 47.8
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.3e-30 136.3 179 50.3
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 3.0e-30 136.0 216 43.5
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 3.0e-30 136.0 178 48.9
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 3.0e-30 136.0 211 47.9
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 3.9e-30 135.6 175 48.0
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 3.9e-30 135.6 175 48.0
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 5.1e-30 135.2 215 42.8
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 6.7e-30 134.8 217 44.2
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 8.7e-30 134.4 212 43.4
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 8.7e-30 134.4 219 45.2
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 1.1e-29 134.0 200 44.5
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.1e-29 134.0 174 47.1
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 1.5e-29 133.7 218 42.7
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.5e-29 133.7 171 50.3
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.5e-29 133.7 217 43.3
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.9e-29 133.3 212 42.5
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 3.3e-29 132.5 171 48.5
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 7.4e-29 131.3 179 49.2
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 7.4e-29 131.3 175 47.4
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.4e-29 131.3 171 51.5
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 9.6e-29 131.0 170 48.8
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.3e-28 130.6 214 43.0
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.8e-28 129.4 176 48.9
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.8e-28 129.4 175 48.6
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.8e-28 128.6 214 44.4
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 4.8e-28 128.6 213 42.7
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 6.2e-28 128.3 206 44.7
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.1e-27 127.5 183 48.6
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.4e-27 126.3 217 43.3
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 3.1e-27 125.9 176 48.3
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.1e-27 125.9 171 48.5
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 4.0e-27 125.6 189 42.9
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 5.3e-27 125.2 217 42.4
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.5e-26 123.6 174 44.3
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.0e-26 123.2 239 39.7
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.6e-26 122.9 215 41.9
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 3.4e-26 122.5 215 41.4
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 5.8e-26 121.7 175 46.3
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.8e-26 121.7 216 41.7
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 9.9e-26 120.9 216 42.1
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 3.8e-25 119.0 211 39.3
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 3.8e-25 119.0 180 47.2
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 3.8e-25 119.0 180 47.2
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 3.8e-25 119.0 204 43.6
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 8.4e-25 117.9 178 44.4
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 8.4e-25 117.9 175 46.3
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.1e-24 117.5 182 43.4
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.4e-24 117.1 214 41.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.4e-24 117.1 179 45.8
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 2.4e-24 116.3 213 39.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.2e-24 115.9 203 42.4
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.2e-24 115.9 203 42.4
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 7.1e-24 114.8 91 70.3
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.2e-23 114.0 183 41.0
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.2e-23 114.0 215 39.1
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.2e-23 114.0 173 45.7
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.6e-23 113.6 201 41.8
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.6e-23 113.6 216 40.3
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 2.1e-23 113.2 201 41.3
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.5e-23 112.5 218 38.1
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 3.5e-23 112.5 176 46.0
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 4.6e-23 112.1 171 45.0
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 6.0e-23 111.7 211 40.3
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 6.0e-23 111.7 176 44.3
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 8.7e-22 107.8 216 38.0
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.5e-21 107.1 211 37.9
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.5e-21 107.1 176 45.5
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 2.5e-21 106.3 180 38.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 7.4e-21 104.8 199 40.7
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.1e-20 103.2 199 40.7
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.1e-20 103.2 201 38.8
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.8e-20 102.8 210 37.1
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 3.7e-20 102.4 205 40.5
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 4.8e-20 102.1 170 40.0
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 6.2e-20 101.7 155 47.1
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 7.6e-18 94.7 209 36.8
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.2e-17 93.2 207 35.7
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 6.5e-17 91.7 120 45.8
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 8.4e-17 91.3 170 41.8
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.9e-16 90.1 85 63.5
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.2e-15 87.4 177 41.2
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 3.5e-15 85.9 92 60.9
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.3e-14 84.0 198 34.3
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 5.1e-14 82.0 89 56.2
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.5e-13 80.5 93 57.0
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 5.7e-13 78.6 141 39.0
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 3.7e-12 75.9 108 40.7
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 8.2e-12 74.7 98 49.0
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.1e-11 74.3 80 57.5
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 1.1e-11 74.3 80 57.5
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.7e-09 67.0 85 50.6
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 3.8e-09 65.9 124 41.1
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.6e-07 60.5 97 47.4
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.6e-07 60.5 85 43.5
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 3.6e-07 59.3 45 66.7
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 8.8e-06 54.7 92 41.3


User provided reference genes

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