Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.4e-301 1038.9 529 100.0
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.9e-275 951.4 542 90.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 8.4e-243 843.6 530 82.5
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.5e-239 832.0 574 76.1
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.5e-228 796.2 514 80.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.8e-221 772.7 521 77.7
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 9.7e-215 750.4 529 75.2
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.1e-210 736.9 529 70.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 7.4e-207 724.2 541 69.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.8e-206 722.2 538 71.4
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.8e-206 721.5 539 70.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 6.3e-206 721.1 529 70.9
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-205 720.3 531 71.4
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.1e-205 720.3 531 71.4
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.1e-205 720.3 532 71.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.1e-205 718.4 531 71.0
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.7e-203 713.0 531 71.6
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.9e-202 709.5 531 70.1
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.1e-201 706.1 496 72.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.8e-200 703.0 496 72.0
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 5.2e-200 701.4 500 72.4
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.6e-199 699.1 496 72.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 3.3e-199 698.7 529 69.2
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.3e-199 698.7 529 69.2
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 4.4e-199 698.4 542 69.6
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.8e-198 695.7 529 69.0
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 6.3e-198 694.5 531 68.9
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.1e-197 693.7 520 69.6
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.3e-197 691.4 529 68.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.3e-197 691.4 532 68.0
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.7e-195 686.4 521 69.3
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.5e-194 682.6 530 68.1
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 4.2e-194 681.8 522 68.8
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 5.5e-194 681.4 522 68.8
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 6.1e-193 677.9 520 68.7
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.8e-192 676.4 522 67.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.3e-192 676.0 544 65.4
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.0e-191 672.9 537 66.9
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 7.5e-191 671.0 521 68.3
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.3e-190 670.2 518 67.4
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.2e-190 669.5 532 67.1
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.2e-190 667.5 490 72.9
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.0e-188 662.9 543 64.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 7.7e-188 661.0 542 64.8
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 6.5e-187 657.9 549 65.0
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.5e-186 656.8 520 69.2
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.9e-186 656.4 521 65.8
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 5.2e-184 648.3 563 62.3
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 9.8e-183 644.0 521 65.3
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.2e-182 642.9 516 66.1
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.8e-182 642.5 525 65.1
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 3.1e-181 639.0 541 63.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.1e-181 639.0 517 65.8
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.1e-181 638.6 542 62.5
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 9.1e-181 637.5 515 65.6
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.2e-180 637.1 526 65.0
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 3.5e-180 635.6 534 67.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 4.2e-178 628.6 516 64.1
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 7.2e-178 627.9 521 65.1
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 4.7e-177 625.2 537 64.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 5.2e-176 621.7 517 64.6
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.2e-175 620.5 519 64.5
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 2.2e-174 616.3 438 72.8
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.3e-171 606.3 516 62.2
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.5e-170 603.6 535 62.6
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.3e-166 590.5 566 58.8
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 3.5e-164 582.4 524 60.3
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 2.8e-161 572.8 515 61.0
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.5e-159 567.0 568 58.6
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.7e-158 562.4 531 57.6
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.6e-153 545.8 323 83.9
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.1e-152 544.3 500 60.2
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.4e-151 539.3 500 60.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 3.2e-149 532.7 467 60.2
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 5.4e-149 531.9 408 68.4
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.6e-148 530.4 402 70.4
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.2e-133 479.6 491 51.1
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 5.8e-127 458.8 348 70.1
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.2e-124 451.1 353 66.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.1e-122 444.5 503 52.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 8.1e-121 438.3 423 57.2
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 6.9e-112 408.7 385 58.7
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-104 384.8 491 49.1
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 4.8e-97 359.4 465 47.3
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.0e-90 337.4 343 57.4
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.0e-87 327.4 292 64.7
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-74 283.5 472 39.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 4.4e-74 283.1 470 38.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.7e-73 281.2 502 37.8
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.8e-73 279.6 449 41.9
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 6.3e-73 279.3 468 38.5
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 9.1e-72 275.4 494 39.3
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 4.5e-71 273.1 200 71.5
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-70 270.4 419 40.8
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.8e-70 270.0 461 38.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 5.0e-70 269.6 499 38.7
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-69 268.5 436 40.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-69 268.5 442 41.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.9e-69 267.7 463 38.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.2e-69 266.9 429 40.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.2e-69 266.9 466 38.0
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 8.0e-68 262.3 427 39.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 5.2e-67 259.6 469 37.5
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.6e-66 257.3 460 38.7
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-66 257.3 530 37.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 7.5e-66 255.8 453 39.3
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.5e-66 255.8 430 38.8
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 4.8e-65 253.1 453 39.5
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 6.3e-65 252.7 440 38.9
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 8.3e-65 252.3 440 38.6
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.1e-64 250.4 440 38.6
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.1e-64 250.0 424 38.2
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.9e-63 246.1 472 35.6
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.3e-62 244.2 441 37.6
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 2.9e-62 243.8 450 39.1
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.8e-62 243.4 447 36.7
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-61 241.1 447 36.5
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 3.3e-61 240.4 444 38.3
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.5e-61 239.6 447 36.5
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 4.7e-60 236.5 429 38.9
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.3e-59 234.2 382 40.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 3.4e-58 230.3 456 35.3
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 7.5e-58 229.2 482 37.1
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-55 221.1 426 35.7
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 4.5e-55 219.9 410 36.6
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 4.5e-55 219.9 166 68.1
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 7.8e-55 219.2 374 36.4
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 8.6e-54 215.7 400 36.2
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.8e-51 208.0 587 31.3
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.2e-49 201.1 392 35.7
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.3e-46 191.0 150 62.0
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 2.3e-46 191.0 393 34.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.6e-46 189.5 413 34.9
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.4e-40 171.0 216 48.1
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 4.1e-40 170.2 189 56.6
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-37 161.8 293 37.5
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.5e-37 161.0 423 31.9
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.5e-37 161.0 265 40.8
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-34 151.4 108 64.8
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.4e-34 150.2 111 75.7
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.9e-33 146.7 257 40.9
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.1e-32 143.7 238 37.4
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.7e-31 141.0 92 76.1
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.3e-30 137.9 267 37.1
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.4e-27 127.9 80 82.5
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 4.9e-25 120.2 188 39.4
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.1e-24 119.0 188 38.8
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-24 118.6 181 42.5
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.4e-24 117.9 181 42.0
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.0e-22 112.5 169 45.6
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.5e-21 107.8 131 46.6
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-20 104.8 127 44.9
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.6e-20 104.0 61 85.2
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 9.9e-18 95.9 149 40.3
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.4e-17 92.8 140 39.3
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.1e-16 92.4 65 63.1
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.2e-16 90.5 84 61.9
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 4.2e-16 90.5 305 29.8
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 7.1e-16 89.7 59 67.8
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.2e-15 89.0 60 66.7
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-14 85.1 83 53.0
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-14 84.7 132 45.5
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 6.6e-14 83.2 111 52.3
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 8.7e-14 82.8 296 27.7
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.1e-13 82.4 150 34.7
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 3.3e-13 80.9 56 71.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 9.6e-13 79.3 129 35.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.3e-12 79.0 100 42.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.6e-12 77.4 151 35.8
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.8e-12 77.0 41 90.2
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 6.2e-12 76.6 177 37.3
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.0e-11 73.9 115 36.5
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.2e-10 72.4 46 80.4
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 2.0e-10 71.6 93 41.9
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.3e-09 68.9 80 50.0
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.7e-09 68.6 74 54.1
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.1e-08 65.9 61 52.5
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.4e-08 63.5 106 30.2
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 5.4e-08 63.5 60 50.0
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 2.1e-07 61.6 147 36.1
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-06 57.8 95 43.2


User provided reference genes

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