Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 0.0e+00 1137.1 619 100.0
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.9e-218 761.5 638 70.2
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.6e-168 597.0 701 54.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.9e-125 453.4 687 47.6
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.4e-125 452.2 407 65.4
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 1.1e-119 434.9 380 67.9
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 5.2e-119 432.6 686 46.6
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.2e-118 431.4 664 47.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.4e-118 429.5 636 48.1
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.1e-116 422.2 631 47.4
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 3.3e-113 413.3 692 45.8
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 8.9e-111 405.2 706 43.6
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.8e-110 402.5 670 44.2
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.4e-108 396.0 660 44.1
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 9.2e-108 395.2 678 44.4
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.5e-107 393.3 661 44.2
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 6.6e-106 389.0 690 43.2
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 9.6e-105 385.2 673 43.2
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.4e-103 381.3 667 43.3
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-103 381.3 641 43.7
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.8e-103 380.9 663 43.7
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 9.0e-103 378.6 663 43.6
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.5e-102 377.9 617 45.1
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 7.6e-102 375.6 657 42.3
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.9e-100 370.9 659 41.6
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.4e-100 370.5 627 43.1
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 2.7e-99 367.1 627 45.6
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 3.5e-99 366.7 663 41.9
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.0e-98 365.2 613 43.4
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.0e-98 363.6 839 36.7
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 8.7e-98 362.1 717 40.2
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.5e-97 361.3 631 44.2
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.6e-97 359.4 668 41.0
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 5.6e-97 359.4 716 40.5
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 7.3e-97 359.0 650 42.0
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 4.8e-96 356.3 654 42.2
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 2.0e-94 350.9 469 51.0
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.0e-94 350.9 721 39.8
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.9e-93 347.1 667 41.8
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 4.9e-93 346.3 661 41.1
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 8.4e-93 345.5 645 40.8
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.4e-92 344.7 709 40.1
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.4e-92 344.7 708 40.0
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.4e-92 344.7 688 40.8
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.4e-92 344.0 638 41.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 9.3e-92 342.0 668 40.6
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.5e-91 340.1 659 41.1
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.0e-90 338.6 632 41.9
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 2.5e-89 334.0 615 42.6
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 2.5e-89 334.0 632 40.0
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 5.6e-89 332.8 398 54.0
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 7.4e-89 332.4 655 40.3
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 9.6e-89 332.0 775 36.1
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 4.8e-88 329.7 635 40.9
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 6.2e-88 329.3 711 38.1
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.4e-87 328.2 646 41.2
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.4e-87 328.2 665 40.0
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 2.4e-87 327.4 655 40.9
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 3.1e-87 327.0 636 40.7
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 6.9e-87 325.9 631 39.9
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 9.0e-87 325.5 637 40.8
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-86 323.9 671 39.9
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 2.6e-86 323.9 621 40.3
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 7.6e-86 322.4 667 40.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 9.9e-86 322.0 647 40.6
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.9e-85 320.5 674 39.3
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 2.9e-85 320.5 651 40.2
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.9e-85 319.7 646 40.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 3.2e-84 317.0 644 40.4
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.6e-83 314.7 621 39.0
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 2.1e-83 314.3 615 40.0
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.3e-81 307.0 533 43.2
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 7.4e-81 305.8 629 37.8
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.8e-80 303.9 647 38.5
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.2e-80 302.8 617 39.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-79 302.0 327 56.3
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.4e-79 300.8 670 38.8
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 2.4e-79 300.8 268 64.9
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 2.4e-79 300.8 644 40.2
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.4e-79 300.8 700 36.4
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.0e-79 300.1 632 37.8
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 6.9e-79 299.3 386 51.0
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 9.0e-79 298.9 670 38.7
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.0e-77 295.4 638 37.6
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.0e-77 295.4 648 36.4
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.7e-77 294.7 616 37.5
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.7e-77 294.7 662 35.5
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.2e-77 294.3 612 37.6
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.9e-77 293.9 618 39.6
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.4e-76 291.6 645 37.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.9e-76 291.2 634 37.9
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 2.5e-76 290.8 616 37.2
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.5e-76 290.8 649 37.4
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.2e-76 290.4 649 38.7
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.2e-76 290.0 626 36.4
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 5.5e-76 289.7 366 51.1
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 6.0e-75 286.2 646 37.0
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.0e-74 285.4 653 38.4
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.3e-74 285.0 631 37.6
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.0e-74 283.9 639 37.9
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 5.1e-74 283.1 615 38.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 2.5e-73 280.8 623 37.4
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.5e-73 280.8 644 36.2
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 6.3e-72 276.2 633 36.8
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 4.1e-71 273.5 632 35.4
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.4e-70 270.4 661 36.3
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.9e-69 267.3 276 60.1
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.9e-69 267.3 276 60.1
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 3.8e-69 266.9 632 36.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.5e-68 264.2 613 37.0
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.6e-67 261.5 671 34.3
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 3.6e-67 260.4 619 38.4
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.0e-66 258.8 702 33.6
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.8e-66 258.1 617 35.8
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 5.1e-66 256.5 616 36.0
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-65 255.0 637 37.4
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 5.7e-65 253.1 614 36.3
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 7.4e-65 252.7 618 34.6
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.1e-63 246.9 614 36.0
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 4.1e-63 246.9 630 37.3
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.4e-62 243.8 630 38.1
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 6.5e-61 239.6 658 35.9
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 5.5e-60 236.5 647 34.3
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.7e-59 234.2 631 34.5
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 4.7e-59 233.4 678 31.9
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 4.7e-59 233.4 265 52.1
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 4.7e-59 233.4 378 43.9
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 4.7e-59 233.4 644 34.0
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 6.1e-59 233.0 511 37.8
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 8.2e-56 222.6 216 62.5
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.4e-55 221.9 216 62.0
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 8.2e-48 196.1 632 33.2
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 2.6e-46 191.0 647 31.5
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.3e-45 188.7 674 30.9
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.7e-45 188.3 579 30.9
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 6.5e-45 186.4 327 41.3
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.1e-44 185.7 641 32.4
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 3.2e-44 184.1 176 63.6
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 1.6e-43 181.8 464 35.1
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 8.0e-43 179.5 622 31.8
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-41 175.3 252 44.0
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.3e-41 174.1 281 43.1
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.8e-39 168.3 619 32.0
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.9e-37 161.0 258 35.7
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.2e-35 155.6 299 38.8
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.2e-33 149.1 224 40.2
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.9e-29 134.4 594 29.3
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.5e-28 131.3 273 39.2
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.7e-27 127.1 191 39.8
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.8e-26 123.2 263 43.3
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.1e-23 114.4 173 42.8
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.2e-22 112.5 79 72.2
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.6e-22 112.1 199 42.2
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.0e-21 109.4 234 34.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.9e-20 105.1 135 48.1
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 4.3e-20 104.0 207 37.7
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.6e-17 94.7 91 53.8
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 7.5e-17 93.2 175 40.0
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.3e-16 92.4 129 46.5
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.1e-15 89.4 383 27.4
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.1e-15 87.4 129 45.7
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.0e-14 85.1 163 38.7
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.0e-13 82.8 57 66.7
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.9e-13 80.9 129 40.3
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.5e-12 79.0 105 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 3.6e-11 74.3 501 23.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 3.6e-11 74.3 171 36.3
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.1e-10 72.8 76 56.6
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 1.1e-10 72.8 104 46.2
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.1e-10 71.2 49 69.4
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.1e-10 71.2 49 69.4
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 4.0e-10 70.9 117 43.6
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.4e-09 67.4 108 39.8
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.3e-08 65.9 255 28.6
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.7e-08 64.3 179 33.0
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 4.9e-08 63.9 56 66.1
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 6.4e-08 63.5 46 67.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 5.4e-07 60.5 73 46.6
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 5.4e-07 60.5 333 28.8
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.0e-07 60.1 97 52.6
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 3.5e-06 57.8 53 62.3
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 6.0e-06 57.0 49 53.1
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 6.0e-06 57.0 78 39.7
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 7.8e-06 56.6 49 53.1


User provided reference genes

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