Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.5e-242 842.4 430 100.0
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.3e-196 689.9 432 83.6
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.4e-155 553.5 436 68.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 8.0e-151 537.7 432 65.7
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.1e-135 486.5 436 61.0
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 3.5e-130 469.2 433 58.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 6.6e-129 464.9 433 57.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.9e-128 463.4 433 57.5
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 9.9e-125 451.1 432 55.6
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 4.9e-124 448.7 432 55.8
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 3.3e-120 436.0 362 63.8
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 6.2e-119 431.8 429 55.5
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 5.2e-118 428.7 435 54.0
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 8.9e-118 427.9 441 54.2
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 6.4e-116 421.8 434 53.7
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.2e-115 419.1 442 53.6
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.0e-113 414.5 435 54.0
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.3e-113 413.3 433 52.7
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 3.0e-113 412.9 435 53.8
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-112 410.2 436 52.5
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 8.1e-111 404.8 322 67.7
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.8e-110 403.7 431 51.3
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.3e-110 402.1 398 54.5
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 6.4e-108 395.2 433 51.3
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 5.4e-107 392.1 433 51.5
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.2e-106 391.0 429 50.8
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.6e-106 390.6 434 50.9
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 6.0e-106 388.7 443 49.9
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.8e-106 388.3 434 50.7
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.1e-104 384.4 434 50.7
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.1e-103 380.2 437 49.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 3.6e-103 379.4 439 49.2
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.6e-103 379.4 437 49.7
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.8e-102 377.1 437 49.2
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.4e-102 376.7 431 49.4
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.1e-102 376.3 436 48.9
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.5e-101 374.0 429 49.7
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 3.4e-101 372.9 429 49.7
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 4.5e-101 372.5 438 50.7
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.8e-101 372.1 429 49.7
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 2.9e-100 369.8 437 50.1
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-99 367.9 429 49.2
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 4.2e-99 365.9 434 49.3
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.2e-98 364.4 435 48.5
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.1e-98 363.6 429 48.7
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 4.6e-98 362.5 458 46.9
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.3e-97 360.9 360 56.7
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.9e-96 357.1 434 48.4
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 4.3e-96 355.9 448 47.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.1e-95 353.6 438 48.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.8e-95 353.2 431 47.3
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 8.1e-95 351.7 442 46.8
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 2.4e-94 350.1 431 45.0
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.5e-93 347.4 433 46.2
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.5e-93 347.4 437 46.0
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 7.6e-93 345.1 406 48.8
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.0e-92 344.7 429 47.1
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.2e-92 343.6 431 45.0
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.9e-92 343.2 438 45.7
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 3.8e-92 342.8 438 45.2
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 4.9e-92 342.4 429 47.8
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 4.9e-92 342.4 442 46.8
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 6.5e-92 342.0 425 48.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.1e-91 341.3 430 47.9
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 4.2e-91 339.3 433 48.7
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 5.5e-91 339.0 438 45.7
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 2.7e-90 336.7 430 47.0
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 6.0e-90 335.5 431 43.9
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.3e-89 334.3 441 46.5
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.3e-89 334.3 440 46.8
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.8e-89 334.0 432 45.8
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-89 334.0 434 46.3
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.3e-89 333.6 433 46.9
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.1e-88 331.3 397 49.4
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.9e-88 330.5 407 47.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.5e-88 330.1 433 45.0
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 9.6e-88 328.2 430 43.5
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-86 324.7 430 45.3
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.4e-86 324.3 444 45.0
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.0e-86 321.6 433 45.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.6e-85 320.1 433 43.2
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.3e-84 317.8 431 45.5
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.3e-84 317.8 431 45.5
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.3e-84 317.8 433 43.4
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.3e-84 317.8 352 49.4
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.7e-84 317.4 439 42.8
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.8e-84 316.2 438 45.0
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.5e-83 312.4 344 51.2
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 7.1e-83 312.0 434 42.4
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 7.1e-83 312.0 431 42.0
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 9.3e-83 311.6 437 44.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.1e-82 310.5 432 42.6
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.6e-82 309.3 440 44.1
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.0e-81 308.1 430 43.7
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-81 307.4 428 42.1
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 3.0e-81 306.6 435 42.1
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.0e-81 306.6 435 42.1
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 5.1e-81 305.8 433 42.7
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.9e-80 303.9 427 43.8
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.2e-79 300.4 434 41.0
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 3.7e-79 299.7 432 42.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 3.7e-79 299.7 431 42.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 4.8e-79 299.3 433 40.6
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.4e-78 297.0 432 41.0
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 7.7e-77 292.0 434 38.0
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 7.7e-77 292.0 447 40.5
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.1e-75 288.1 438 42.0
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 3.2e-75 286.6 448 41.3
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.2e-74 284.6 491 37.5
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.4e-73 281.2 439 41.2
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 4.3e-72 276.2 434 39.9
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 3.1e-70 270.0 426 41.8
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 5.3e-70 269.2 433 37.6
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 3.4e-69 266.5 441 40.6
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.6e-66 257.7 426 39.7
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.4e-62 243.8 421 37.8
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 5.3e-62 242.7 420 38.3
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-61 241.1 415 39.0
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.3e-60 238.0 428 36.0
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.2e-60 237.3 426 38.0
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.5e-59 233.8 423 35.5
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.1e-56 224.9 346 39.9
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.6e-56 223.8 272 46.7
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 4.4e-56 223.0 272 45.2
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 8.2e-55 218.8 292 45.2
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 2.4e-54 217.2 179 63.1
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.2e-53 214.9 416 34.6
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 7.2e-51 205.7 444 35.8
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 8.0e-50 202.2 372 35.2
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 6.1e-42 176.0 431 31.6
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.4e-38 164.9 413 31.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 5.0e-36 156.4 168 51.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.6e-32 144.1 227 39.6
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 9.8e-32 142.1 281 37.0
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 3.2e-30 137.1 195 43.1
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.8e-25 121.3 148 45.3
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.8e-25 121.3 148 45.3
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-25 119.8 148 44.6
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 5.2e-25 119.8 148 44.6
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 4.4e-24 116.7 141 44.7
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.9e-22 111.3 392 28.1
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 5.6e-19 99.8 169 36.7
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.1e-18 97.8 128 48.4
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 2.8e-18 97.4 86 58.1
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 1.6e-13 81.6 123 37.4
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.9e-11 74.7 274 27.0
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.3e-11 73.6 65 58.5
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 9.5e-11 72.4 95 40.0
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 9.5e-11 72.4 95 40.0
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-10 71.2 62 51.6
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.8e-09 68.2 114 37.7
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 3.1e-09 67.4 80 38.8
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-08 65.1 64 46.9
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 4.4e-08 63.5 88 40.9
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.7e-07 61.6 59 50.8
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.7e-07 61.6 59 50.8
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.7e-07 61.6 59 50.8
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-06 58.9 75 38.7
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-06 58.9 57 50.9
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-06 57.8 76 42.1
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.4e-06 56.6 79 44.3
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.4e-06 56.6 79 44.3


User provided reference genes

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